Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRS73_RS25670 Genome accession   NZ_CP089295
Coordinates   5578464..5579027 (-) Length   187 a.a.
NCBI ID   WP_099955787.1    Uniprot ID   A0A2R4WR35
Organism   Methylobacterium currus strain TP-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5573464..5584027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS73_RS25665 (LRS73_25665) - 5576219..5578384 (+) 2166 WP_232386758.1 TonB-dependent receptor -
  LRS73_RS25670 (LRS73_25670) ssb 5578464..5579027 (-) 564 WP_099955787.1 single-stranded DNA-binding protein Machinery gene
  LRS73_RS25675 (LRS73_25675) - 5579243..5580532 (-) 1290 WP_232386759.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  LRS73_RS25680 (LRS73_25680) - 5580558..5580917 (-) 360 WP_048449488.1 response regulator -
  LRS73_RS25685 (LRS73_25685) - 5581134..5582300 (-) 1167 WP_232386760.1 sensor histidine kinase -
  LRS73_RS25690 (LRS73_25690) - 5582493..5583770 (-) 1278 WP_232386761.1 O-acetylhomoserine aminocarboxypropyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19981.00 Da        Isoelectric Point: 7.0247

>NTDB_id=636234 LRS73_RS25670 WP_099955787.1 5578464..5579027(-) (ssb) [Methylobacterium currus strain TP-3]
MAGSVNKVILVGNLGRDPETRRLASGDPVVNLRLATSESWKDKATGERKEKTEWHSVVIYNENLARVAEQYLRKGSKVYV
EGQLQTRKWQDQSGVEKYTTEIVLQRFRGELTILDGRGGGAEGGMSEMGADDMGGGQISRGGDFGGGGGGAGRSSGGRSS
SGGERRPAPSGGGNQKRYDDLDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=636234 LRS73_RS25670 WP_099955787.1 5578464..5579027(-) (ssb) [Methylobacterium currus strain TP-3]
ATGGCGGGCAGCGTGAACAAGGTGATCCTGGTGGGCAATCTCGGGCGCGATCCCGAGACCCGCCGGCTGGCCTCCGGCGA
TCCGGTGGTGAACCTGCGCCTGGCCACGTCCGAGTCCTGGAAGGACAAGGCGACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGAGAACCTGGCCCGGGTCGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACGTC
GAGGGGCAGCTCCAGACCCGCAAGTGGCAGGACCAGTCCGGCGTCGAGAAGTACACGACCGAGATCGTGCTGCAGCGCTT
CCGCGGCGAGCTGACGATCCTCGACGGCCGCGGCGGCGGGGCCGAGGGCGGCATGTCCGAGATGGGCGCCGACGACATGG
GCGGCGGCCAGATCAGCCGCGGCGGCGATTTCGGCGGCGGTGGCGGTGGCGCCGGTCGCAGCAGCGGTGGACGCTCGTCG
TCCGGCGGCGAGCGGCGCCCGGCCCCGTCGGGTGGCGGCAACCAGAAGCGCTACGACGACCTGGACGACGATATCCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4WR35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.644

100

0.487
  ssb Vibrio cholerae strain A1552

48.663

100

0.487
  ssb Neisseria meningitidis MC58

38.71

99.465

0.385
  ssb Neisseria gonorrhoeae MS11

38.298

100

0.385