Detailed information NTG0636061

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LT107_RS02610
• Genome accession: NZ_CP089282
• Coordinates: 575012..576349 (-)
• Length: 445 a.a.
• NCBI ID: WP_243786960.1
• Uniprot ID: -
• Organism: Pseudomonas amygdali pv. loropetali strain AAC
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 570012..581349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT107_RS02600 (LT107_02600)	-	573021..574130 (-)	1110	WP_054070789.1	efflux RND transporter periplasmic adaptor subunit	-
LT107_RS02605 (LT107_02605)	-	574212..574829 (-)	618	WP_002551994.1	TetR/AcrR family transcriptional regulator	-
LT107_RS02610 (LT107_02610)	pilR	575012..576349 (-)	1338	WP_243786960.1	sigma-54 dependent transcriptional regulator	Regulator
LT107_RS02615 (LT107_02615)	pilS	576352..577944 (-)	1593	WP_054070791.1	ATP-binding protein	Regulator
LT107_RS02620 (LT107_02620)	-	577934..578173 (-)	240	WP_002551997.1	PP0621 family protein	-
LT107_RS02625 (LT107_02625)	-	578303..579325 (-)	1023	WP_243786959.1	outer membrane protein assembly factor BamD	-
LT107_RS02630 (LT107_02630)	rluD	579475..580437 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LT107_RS02635 (LT107_02635)	pgeF	580434..581162 (+)	729	WP_044319538.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49815.91 Da
• Isoelectric Point: 6.6378

>NTDB_id=636061 LT107_RS02610 WP_243786960.1 575012..576349(-) (pilR) [Pseudomonas amygdali pv. loropetali strain AAC]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQILDVRILCATHKNLNAEVATGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEHSGPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=636061 LT107_RS02610 WP_243786960.1 575012..576349(-) (pilR) [Pseudomonas amygdali pv. loropetali strain AAC]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAATGGCCTTGAGCTGGTGCAGCATATCCAGCACGGCTACCCTCATGTGCCGGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGATAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCTGGTCTGTTTCAGGCGGCACATACCGGAACGCTGTTTCTCGACGAAGTGGCCGACCTGCCG
CTGGCCATGCAGGTAAAACTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTGTAGGCAGCCAGCAAGAGCAGATTCT
GGACGTACGCATTCTGTGCGCCACGCACAAGAACCTTAATGCAGAGGTTGCGACAGGCCGTTTCCGTCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAGCGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTGGACACGCTGAAGAGCTACCG
ATTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCATGCCA
GCGACCTGCGCCTTGCAGAGTCCGCCAGCCCCCAGGAGCACAGCGGTCCTAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTCGAAAGCATCGAGCGCAAGCTGATTCTGCAGGCCCTGGAAGAAACCCGCTGGAACCGTACCGCAGCAGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.252	99.775	0.771
pilR	Acinetobacter baumannii strain A118	48.276	100	0.503
luxO	Vibrio cholerae strain A1552	36.937	99.775	0.369