Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LT107_RS02615 Genome accession   NZ_CP089282
Coordinates   576352..577944 (-) Length   530 a.a.
NCBI ID   WP_054070791.1    Uniprot ID   A0A108WXC3
Organism   Pseudomonas amygdali pv. loropetali strain AAC     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 571352..582944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT107_RS02600 (LT107_02600) - 573021..574130 (-) 1110 WP_054070789.1 efflux RND transporter periplasmic adaptor subunit -
  LT107_RS02605 (LT107_02605) - 574212..574829 (-) 618 WP_002551994.1 TetR/AcrR family transcriptional regulator -
  LT107_RS02610 (LT107_02610) pilR 575012..576349 (-) 1338 WP_243786960.1 sigma-54 dependent transcriptional regulator Regulator
  LT107_RS02615 (LT107_02615) pilS 576352..577944 (-) 1593 WP_054070791.1 ATP-binding protein Regulator
  LT107_RS02620 (LT107_02620) - 577934..578173 (-) 240 WP_002551997.1 PP0621 family protein -
  LT107_RS02625 (LT107_02625) - 578303..579325 (-) 1023 WP_243786959.1 outer membrane protein assembly factor BamD -
  LT107_RS02630 (LT107_02630) rluD 579475..580437 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LT107_RS02635 (LT107_02635) pgeF 580434..581162 (+) 729 WP_044319538.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58160.99 Da        Isoelectric Point: 7.0058

>NTDB_id=636062 LT107_RS02615 WP_054070791.1 576352..577944(-) (pilS) [Pseudomonas amygdali pv. loropetali strain AAC]
MTADTPSLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
SLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAAMLVQALTARMQVSEVLAEQRAADVDSLEELNALILQRMRTGILVLDANRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLVNPIMVPRSVTTSPIGPVLQPSFAALNRGDQRQTLIFLEDLSQITHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=636062 LT107_RS02615 WP_054070791.1 576352..577944(-) (pilS) [Pseudomonas amygdali pv. loropetali strain AAC]
GTGACCGCTGACACGCCCTCGCTTGCCAGCCCACAGGCGCAAAGGATTCTGCGGCTTTACCACCTTTATCGACTGACCAT
CGGCGTGGTACTGGTCCTGCTGATTTCCAGCAGTCTGGAAACCGAACTGTTGCAACTGGCCAATCCAAACCTGTTCCGCT
CGGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGTCCCAGCCGTCAGGCGCAGCTGTTC
AGTCTGGCAATGACTGACGCAATCATGCTCTCTGCGCTGTTCTACGCGGCGGGTGGCCCTTCCAGCGGCATCGGCAATCT
GTTGATTGCTTCCGTAGCAATCAGCAATGTATTGCTGCGGGGCCGTATCGGTTTGCTGATCGCCGCCGTTTCTGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCGTCGGTTTCCAACGACTACGTGCAGGCTGGCTCTCTGGGT
GCCCTGTGCTTCGCCGCCGCAATGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAAGTGCTGGCCGAACAGCG
TGCAGCGGATGTCGACAGCCTTGAAGAACTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTACTGGATG
CCAACCGTCAGGTGCTGCTGGCCAATCAAGGTGCCCTTACCCTACTGGGCCACGAGCGACTGGTCGGCCAGGTTATCGAC
GCTTACTCGCCGCAGTTGGTGGAACGCCTGCGCCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCGTCACGACTTC
ACCCATCGGGCCGGTGCTGCAACCGAGCTTTGCCGCGCTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTTGAAG
ACCTGTCGCAGATTACCCATCAGGCGCAGCAGCTCAAGCTCGCCGCGCTGGGACGCCTGACCGCCGGGATTGCCCACGAG
ATACGCAACCCGCTGGGCGCAGTCAGCCATGCCGCACAGTTACTCAACGAATCTGAAGAACTCAGCGCAGCGGACCGACG
CCTGGGGCAGATCATTCATGACCAGTCGGGGCGTATTGATCGGGTCATCGAAAATGTTCTGCAGTTGTCGCGCAGACGCG
AAGCGCAGCCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCACTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGTCGATTCATGTCGACATAAGCCCCGGCACGCTGACAACCCGCATGGATTCCGGGCAACTGACCCAGATCATGACCAA
CCTGCTACAGAACGGCCTGCGCTACAGCGGCAGAAATCATTCGTCAGCGCAGGTCTGGCTGAAGCTGCATCACGACCGAC
AAAGCGATTTGCCCATTCTGGAAGTACAGGACGACGGGCCAGGGGTCAGCGAGCAACATTTGGCCAAGCTGTTCGAGCCG
TTTTTCACCACGGAAAGCAAAGGCACCGGTCTTGGTCTATATCTGTCACGCGAGCTTTGCGAAAGCAATCAGGCGCACCT
GGAATACGTCCCGCGGCAAGGTGGCGGCAGTTGCCTGCGCATAACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WXC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.205

100

0.613