Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA14_RS32130 Genome accession   NZ_CP106742
Coordinates   6746696..6747193 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PALA14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6741696..6752193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA14_RS32115 (PALA14_06330) - 6741704..6743755 (-) 2052 WP_033865296.1 integrase -
  PALA14_RS32120 (PALA14_06331) - 6743748..6745295 (-) 1548 WP_033865297.1 site-specific integrase -
  PALA14_RS32125 (PALA14_06332) - 6745288..6746565 (-) 1278 WP_033865298.1 tyrosine-type recombinase/integrase -
  PALA14_RS32130 (PALA14_06333) ssb 6746696..6747193 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA14_RS32135 (PALA14_06334) - 6747210..6748598 (-) 1389 WP_003103910.1 MFS transporter -
  PALA14_RS32140 (PALA14_06335) uvrA 6748812..6751649 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PALA14_RS32145 (PALA14_06336) bfr 6751721..6752185 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=635988 PALA14_RS32130 WP_003114685.1 6746696..6747193(-) (ssb) [Pseudomonas aeruginosa strain PALA14]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=635988 PALA14_RS32130 WP_003114685.1 6746696..6747193(-) (ssb) [Pseudomonas aeruginosa strain PALA14]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515