Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LTQ02_RS15300 Genome accession   NZ_CP089205
Coordinates   3360908..3361477 (+) Length   189 a.a.
NCBI ID   WP_102461778.1    Uniprot ID   -
Organism   Vibrio splendidus strain 4_C08b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3355908..3366477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS15290 (LTQ02_15290) galU 3358952..3359824 (-) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LTQ02_RS15295 (LTQ02_15295) qstR 3359982..3360629 (-) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  LTQ02_RS15300 (LTQ02_15300) ssb 3360908..3361477 (+) 570 WP_102461778.1 single-stranded DNA-binding protein Machinery gene
  LTQ02_RS15305 (LTQ02_15305) csrD 3361639..3363654 (+) 2016 WP_102503447.1 RNase E specificity factor CsrD -
  LTQ02_RS15310 (LTQ02_15310) - 3363657..3365099 (+) 1443 WP_102482202.1 MSHA biogenesis protein MshI -
  LTQ02_RS15315 (LTQ02_15315) pilO 3365099..3365746 (+) 648 WP_243579486.1 type 4a pilus biogenesis protein PilO -
  LTQ02_RS15320 (LTQ02_15320) - 3365739..3366071 (+) 333 WP_004735948.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20886.02 Da        Isoelectric Point: 5.2358

>NTDB_id=635769 LTQ02_RS15300 WP_102461778.1 3360908..3361477(+) (ssb) [Vibrio splendidus strain 4_C08b]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQQAQQQYSAPAQQ
QPKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=635769 LTQ02_RS15300 WP_102461778.1 3360908..3361477(+) (ssb) [Vibrio splendidus strain 4_C08b]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAGCCACAGCAGCCACAACAGCAGCAGCAACAAGCACAACAACAATACAGTGCTCCAGCTCAACAG
CAGCCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACAT
CCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.383

99.471

0.561
  ssb Neisseria meningitidis MC58

45.699

98.413

0.45
  ssb Neisseria gonorrhoeae MS11

45.699

98.413

0.45