Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LTQ03_RS00895 Genome accession   NZ_CP089201
Coordinates   199691..200272 (-) Length   193 a.a.
NCBI ID   WP_004734691.1    Uniprot ID   -
Organism   Vibrio splendidus strain 1_C04a     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 194691..205272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ03_RS00875 (LTQ03_00875) - 194879..196141 (-) 1263 WP_017091692.1 DUF945 family protein -
  LTQ03_RS00880 (LTQ03_00880) - 196325..198268 (+) 1944 WP_243583800.1 ATP-binding protein -
  LTQ03_RS00885 (LTQ03_00885) - 198261..198758 (+) 498 WP_243583801.1 response regulator -
  LTQ03_RS00890 (LTQ03_00890) - 198987..199529 (+) 543 WP_004734692.1 hypothetical protein -
  LTQ03_RS00895 (LTQ03_00895) tfoX 199691..200272 (-) 582 WP_004734691.1 TfoX/Sxy family DNA transformation protein Regulator
  LTQ03_RS00900 (LTQ03_00900) - 200630..201550 (+) 921 WP_004734690.1 HDOD domain-containing protein -
  LTQ03_RS00905 (LTQ03_00905) - 201605..202510 (+) 906 WP_017083332.1 lysine exporter LysO family protein -
  LTQ03_RS00910 (LTQ03_00910) - 202685..203212 (+) 528 WP_004734688.1 hypothetical protein -
  LTQ03_RS00915 (LTQ03_00915) panP 203332..204975 (+) 1644 WP_017086484.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22172.59 Da        Isoelectric Point: 9.3844

>NTDB_id=635639 LTQ03_RS00895 WP_004734691.1 199691..200272(-) (tfoX) [Vibrio splendidus strain 1_C04a]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKGCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=635639 LTQ03_RS00895 WP_004734691.1 199691..200272(-) (tfoX) [Vibrio splendidus strain 1_C04a]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTTGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATCAGAGGTGGAAAGTCATTAGATAAAAAAC
TGACGGATCTTGACTGTGAAAAGTATCGTCATGTAAAAAAACAGACAACAGCTACCGTAAATTATTACGATATTACTGAC
CTGTTTACATGCGAACATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAACGTAGCTTTAA
GAAATCATCCGCTAGCCGTAGATTGAGAGATCTACCAAACATGCAACTTACGTTAGAGCGCATGGTTAAAAAGGCGGGTG
TGGACGATGTTTCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGGGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

58.511

97.409

0.57