Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LTK21_RS05370 Genome accession   NZ_CP089161
Coordinates   1118045..1118548 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain UNC_SaCF13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1118045..1138933 1118045..1118548 within 0


Gene organization within MGE regions


Location: 1118045..1138933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK21_RS05370 (LTK21_05370) ssbA 1118045..1118548 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LTK21_RS05375 (LTK21_05375) rpsR 1118600..1118842 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  LTK21_RS05380 (LTK21_05380) - 1119081..1119980 (-) 900 WP_001797289.1 Abi family protein -
  LTK21_RS05385 (LTK21_05385) - 1119982..1121196 (-) 1215 WP_191682956.1 site-specific integrase -
  LTK21_RS05390 (LTK21_05390) - 1121495..1122229 (-) 735 WP_000142630.1 helix-turn-helix domain-containing protein -
  LTK21_RS05395 (LTK21_05395) - 1122378..1122590 (+) 213 WP_001063624.1 helix-turn-helix transcriptional regulator -
  LTK21_RS05400 (LTK21_05400) - 1122591..1122863 (+) 273 WP_001138298.1 helix-turn-helix domain-containing protein -
  LTK21_RS05405 (LTK21_05405) - 1122875..1123021 (+) 147 WP_000784887.1 hypothetical protein -
  LTK21_RS05410 (LTK21_05410) tscA 1123014..1123223 (+) 210 WP_001058495.1 type II toxin-antitoxin system antitoxin TscA -
  LTK21_RS05415 (LTK21_05415) tscT 1123226..1123552 (+) 327 WP_000383747.1 type II toxin-antitoxin system toxin TscT -
  LTK21_RS05420 (LTK21_05420) - 1123617..1124486 (+) 870 WP_191682955.1 primase alpha helix C-terminal domain-containing protein -
  LTK21_RS05425 (LTK21_05425) - 1124500..1126209 (+) 1710 WP_191682954.1 DUF927 domain-containing protein -
  LTK21_RS05430 (LTK21_05430) - 1126519..1126899 (+) 381 WP_000356942.1 hypothetical protein -
  LTK21_RS05435 (LTK21_05435) - 1126896..1127537 (+) 642 WP_191682953.1 pathogenicity island protein -
  LTK21_RS05440 (LTK21_05440) - 1128247..1128591 (+) 345 WP_001288441.1 hypothetical protein -
  LTK21_RS05445 (LTK21_05445) - 1128626..1129204 (+) 579 WP_000856046.1 hypothetical protein -
  LTK21_RS05450 (LTK21_05450) - 1129204..1129380 (+) 177 WP_001160678.1 hypothetical protein -
  LTK21_RS05455 (LTK21_05455) - 1129433..1129960 (+) 528 WP_103144515.1 spore coat protein -
  LTK21_RS05460 (LTK21_05460) - 1130092..1130304 (+) 213 WP_025174984.1 hypothetical protein -
  LTK21_RS05465 (LTK21_05465) - 1130301..1130870 (+) 570 WP_001293066.1 terminase small subunit -
  LTK21_RS05470 (LTK21_05470) - 1131299..1131817 (+) 519 WP_000624990.1 hypothetical protein -
  LTK21_RS05475 (LTK21_05475) - 1131814..1132242 (+) 429 WP_000591858.1 hypothetical protein -
  LTK21_RS05480 (LTK21_05480) - 1132229..1133008 (+) 780 WP_000705255.1 hypothetical protein -
  LTK21_RS05485 (LTK21_05485) - 1133245..1133472 (+) 228 WP_033863179.1 hypothetical protein -
  LTK21_RS05490 (LTK21_05490) - 1133544..1133642 (+) 99 Protein_1085 hypothetical protein -
  LTK21_RS05495 (LTK21_05495) - 1134536..1135474 (-) 939 WP_001817700.1 Abi family protein -
  LTK21_RS05500 (LTK21_05500) - 1135513..1136226 (-) 714 Protein_1087 tyrosine-type recombinase/integrase -
  LTK21_RS05505 (LTK21_05505) selX 1136432..1137043 (+) 612 WP_000475325.1 staphylococcal enterotoxin-like toxin X -
  LTK21_RS05510 (LTK21_05510) - 1137412..1137780 (+) 369 WP_000849163.1 YxeA family protein -
  LTK21_RS05515 (LTK21_05515) - 1137961..1138533 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  LTK21_RS05520 (LTK21_05520) - 1138670..1138933 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=635517 LTK21_RS05370 WP_000934799.1 1118045..1118548(+) (ssbA) [Staphylococcus aureus strain UNC_SaCF13]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=635517 LTK21_RS05370 WP_000934799.1 1118045..1118548(+) (ssbA) [Staphylococcus aureus strain UNC_SaCF13]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAGCGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365