Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LTK19_RS08585 | Genome accession | NZ_CP089156 |
| Coordinates | 1692847..1693350 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain UNC_SaCF35 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1688787..1713016 | 1692847..1693350 | within | 0 |
Gene organization within MGE regions
Location: 1688787..1713016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LTK19_RS08555 (LTK19_08555) | - | 1688787..1689632 (+) | 846 | WP_001573568.1 | ParB/RepB/Spo0J family partition protein | - |
| LTK19_RS08560 (LTK19_08560) | - | 1689786..1690667 (+) | 882 | WP_000373076.1 | mechanosensitive ion channel family protein | - |
| LTK19_RS08565 (LTK19_08565) | - | 1690697..1690900 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| LTK19_RS08570 (LTK19_08570) | ychF | 1690912..1692009 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| LTK19_RS08575 (LTK19_08575) | - | 1692095..1692286 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| LTK19_RS08580 (LTK19_08580) | rpsF | 1692530..1692826 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| LTK19_RS08585 (LTK19_08585) | ssbA | 1692847..1693350 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| LTK19_RS08590 (LTK19_08590) | rpsR | 1693402..1693644 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| LTK19_RS08595 (LTK19_08595) | - | 1693876..1694595 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LTK19_RS08600 (LTK19_08600) | - | 1694708..1695922 (-) | 1215 | WP_000270135.1 | site-specific integrase | - |
| LTK19_RS08605 (LTK19_08605) | - | 1696083..1696706 (-) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| LTK19_RS08610 (LTK19_08610) | - | 1696855..1697018 (+) | 164 | Protein_1672 | helix-turn-helix domain-containing protein | - |
| LTK19_RS08615 (LTK19_08615) | - | 1697019..1697291 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| LTK19_RS08620 (LTK19_08620) | - | 1697303..1697476 (+) | 174 | WP_000784892.1 | hypothetical protein | - |
| LTK19_RS08625 (LTK19_08625) | - | 1697443..1697646 (+) | 204 | WP_232043922.1 | pathogenicity island protein | - |
| LTK19_RS08630 (LTK19_08630) | - | 1697648..1698031 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| LTK19_RS08635 (LTK19_08635) | tscT | 1698032..1698358 (+) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| LTK19_RS08640 (LTK19_08640) | - | 1698423..1699292 (+) | 870 | WP_001002709.1 | primase alpha helix C-terminal domain-containing protein | - |
| LTK19_RS08645 (LTK19_08645) | - | 1699306..1701015 (+) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| LTK19_RS08650 (LTK19_08650) | - | 1701325..1701705 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| LTK19_RS08655 (LTK19_08655) | - | 1701702..1702343 (+) | 642 | WP_001019762.1 | hypothetical protein | - |
| LTK19_RS08660 (LTK19_08660) | - | 1703051..1703395 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| LTK19_RS08665 (LTK19_08665) | - | 1703426..1704079 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| LTK19_RS08670 (LTK19_08670) | - | 1704132..1704659 (+) | 528 | WP_000771361.1 | spore coat protein | - |
| LTK19_RS08675 (LTK19_08675) | - | 1704791..1705003 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| LTK19_RS08680 (LTK19_08680) | - | 1705000..1705569 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| LTK19_RS08690 (LTK19_08690) | - | 1705846..1706814 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| LTK19_RS08695 (LTK19_08695) | - | 1706956..1707393 (+) | 438 | WP_073392942.1 | DUF3102 domain-containing protein | - |
| LTK19_RS08700 (LTK19_08700) | - | 1707511..1708023 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| LTK19_RS08705 (LTK19_08705) | - | 1708039..1708218 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| LTK19_RS08710 (LTK19_08710) | - | 1708982..1709989 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| LTK19_RS08715 (LTK19_08715) | - | 1709995..1710709 (-) | 715 | Protein_1692 | tyrosine-type recombinase/integrase | - |
| LTK19_RS08720 (LTK19_08720) | - | 1710946..1711314 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| LTK19_RS08725 (LTK19_08725) | - | 1711495..1712067 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| LTK19_RS08730 (LTK19_08730) | - | 1712205..1712468 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| LTK19_RS08735 (LTK19_08735) | - | 1712762..1713016 (+) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=635410 LTK19_RS08585 WP_000934799.1 1692847..1693350(+) (ssbA) [Staphylococcus aureus strain UNC_SaCF35]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=635410 LTK19_RS08585 WP_000934799.1 1692847..1693350(+) (ssbA) [Staphylococcus aureus strain UNC_SaCF35]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |