Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LRO88_RS22900 Genome accession   NZ_CP089148
Coordinates   4230315..4230833 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain NIB353     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4225315..4235833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS22870 yyaJ 4225818..4227173 (+) 1356 WP_231834061.1 MFS transporter -
  LRO88_RS22875 maa 4227207..4227761 (-) 555 WP_159377185.1 sugar O-acetyltransferase -
  LRO88_RS22880 yyaH 4227779..4228159 (-) 381 WP_159377186.1 VOC family protein -
  LRO88_RS22885 ccpB 4228215..4229150 (-) 936 WP_159377187.1 transcriptional regulator CcpB -
  LRO88_RS22890 xth 4229209..4229967 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  LRO88_RS22895 rpsR 4230032..4230271 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  LRO88_RS22900 ssbA 4230315..4230833 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  LRO88_RS22905 rpsF 4230874..4231161 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  LRO88_RS22910 ychF 4231272..4232372 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  LRO88_RS22915 yyaE 4232499..4234502 (-) 2004 WP_124047754.1 molybdopterin-dependent oxidoreductase -
  LRO88_RS22920 yyzM 4234553..4234759 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=635342 LRO88_RS22900 WP_003219228.1 4230315..4230833(-) (ssbA) [Bacillus subtilis strain NIB353]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=635342 LRO88_RS22900 WP_003219228.1 4230315..4230833(-) (ssbA) [Bacillus subtilis strain NIB353]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378