Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8E86_RS09970 Genome accession   NZ_CP104914
Coordinates   2123753..2124229 (-) Length   158 a.a.
NCBI ID   WP_264255803.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2118753..2129229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS09915 (N8E86_09915) - 2119543..2119953 (-) 411 WP_264255792.1 hypothetical protein -
  N8E86_RS09920 (N8E86_09920) - 2119953..2120147 (-) 195 WP_264255793.1 hypothetical protein -
  N8E86_RS09925 (N8E86_09925) - 2120567..2120770 (+) 204 WP_021460886.1 hypothetical protein -
  N8E86_RS09930 (N8E86_09930) - 2120868..2121149 (-) 282 WP_264255796.1 hypothetical protein -
  N8E86_RS09935 (N8E86_09935) - 2121194..2121427 (-) 234 WP_264255797.1 hypothetical protein -
  N8E86_RS09940 (N8E86_09940) - 2121420..2121908 (-) 489 WP_264255798.1 hypothetical protein -
  N8E86_RS09945 (N8E86_09945) - 2122024..2122356 (-) 333 WP_264255799.1 hypothetical protein -
  N8E86_RS09950 (N8E86_09950) - 2122359..2122556 (-) 198 WP_017807560.1 hypothetical protein -
  N8E86_RS09955 (N8E86_09955) - 2122572..2122805 (-) 234 WP_264255800.1 hypothetical protein -
  N8E86_RS09960 (N8E86_09960) - 2122870..2123265 (-) 396 WP_264255801.1 hypothetical protein -
  N8E86_RS09965 (N8E86_09965) - 2123262..2123579 (-) 318 WP_264255802.1 DUF6378 domain-containing protein -
  N8E86_RS09970 (N8E86_09970) ssb 2123753..2124229 (-) 477 WP_264255803.1 single-stranded DNA-binding protein Machinery gene
  N8E86_RS09975 (N8E86_09975) - 2124229..2125116 (-) 888 WP_035688055.1 ATP-binding protein -
  N8E86_RS09980 (N8E86_09980) - 2125127..2125627 (-) 501 WP_264255805.1 siphovirus Gp157 family protein -
  N8E86_RS09985 (N8E86_09985) - 2125624..2125848 (-) 225 WP_264255806.1 hypothetical protein -
  N8E86_RS09990 (N8E86_09990) - 2125845..2126000 (-) 156 WP_156127741.1 hypothetical protein -
  N8E86_RS09995 (N8E86_09995) - 2125990..2126265 (-) 276 WP_264255807.1 hypothetical protein -
  N8E86_RS10000 (N8E86_10000) - 2126281..2126589 (-) 309 WP_264255808.1 hypothetical protein -
  N8E86_RS10005 (N8E86_10005) - 2126682..2127329 (-) 648 WP_264255809.1 KilA-N domain-containing protein -
  N8E86_RS10010 (N8E86_10010) - 2127589..2128053 (-) 465 WP_264255810.1 DUF4760 domain-containing protein -
  N8E86_RS10015 (N8E86_10015) - 2128282..2128620 (-) 339 WP_264255811.1 hypothetical protein -
  N8E86_RS10020 (N8E86_10020) - 2128620..2129057 (-) 438 WP_264255812.1 Panacea domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17868.83 Da        Isoelectric Point: 7.2010

>NTDB_id=635146 N8E86_RS09970 WP_264255803.1 2123753..2124229(-) (ssb) [Avibacterium paragallinarum strain AG21-0333]
MAGINKAIIVGNLGNDPEIRTMQNGDQVATISVATSESWTYKQTGERRELTEWHRIVLYRRLAEIAGQYLKKGSKVYIEG
RIRTRKWQDQHGVERYTTEIQGDSLQMLDSRQEGQNAPPTKQANAQAAKPNAYANAKSGNYTPPPQQTDEFDDDQIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=635146 N8E86_RS09970 WP_264255803.1 2123753..2124229(-) (ssb) [Avibacterium paragallinarum strain AG21-0333]
ATGGCAGGCATAAACAAAGCCATCATCGTCGGCAATTTAGGCAACGATCCAGAAATCCGCACAATGCAAAATGGCGATCA
GGTTGCAACAATCAGCGTGGCAACCTCAGAAAGCTGGACTTATAAGCAAACAGGCGAACGGCGAGAACTCACCGAATGGC
ACAGAATTGTGCTTTATCGGCGACTAGCGGAAATTGCAGGGCAATACCTCAAAAAAGGCTCAAAAGTCTATATTGAGGGG
CGTATCAGAACCCGAAAATGGCAAGACCAGCACGGCGTTGAGCGTTACACCACCGAAATTCAAGGCGACAGCTTGCAGAT
GTTAGATAGCCGCCAAGAGGGGCAAAACGCACCACCTACGAAACAGGCTAACGCCCAAGCCGCGAAACCGAACGCTTACG
CTAACGCAAAAAGCGGTAACTACACCCCACCGCCACAACAAACCGATGAATTTGATGACGACCAAATTCCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

59.669

100

0.684
  ssb Vibrio cholerae strain A1552

48.333

100

0.551
  ssb Neisseria meningitidis MC58

50

78.481

0.392
  ssb Neisseria gonorrhoeae MS11

50

78.481

0.392