Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N8E86_RS00480 Genome accession   NZ_CP104914
Coordinates   86457..86969 (-) Length   170 a.a.
NCBI ID   WP_039163718.1    Uniprot ID   A0ABU7QHP2
Organism   Avibacterium paragallinarum strain AG21-0333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 81457..91969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E86_RS00445 (N8E86_00445) tetC 82021..82603 (-) 583 Protein_89 tetracyline resistance-associated transcriptional repressor TetC -
  N8E86_RS00450 (N8E86_00450) - 82691..83107 (+) 417 WP_000275180.1 helix-turn-helix domain-containing protein -
  N8E86_RS00455 (N8E86_00455) - 83117..84325 (-) 1209 WP_006250222.1 IS4-like element ISVsa5 family transposase -
  N8E86_RS00460 (N8E86_00460) - 84265..84726 (-) 462 WP_135953135.1 toprim domain-containing protein -
  N8E86_RS00465 (N8E86_00465) - 84858..85484 (+) 627 WP_110478422.1 plasmid fertility inhibition factor family protein -
  N8E86_RS00470 (N8E86_00470) - 85462..85755 (-) 294 WP_065189242.1 hypothetical protein -
  N8E86_RS00475 (N8E86_00475) - 85895..86374 (-) 480 WP_065189241.1 hypothetical protein -
  N8E86_RS00480 (N8E86_00480) ssb 86457..86969 (-) 513 WP_039163718.1 single-stranded DNA-binding protein Machinery gene
  N8E86_RS00485 (N8E86_00485) - 87170..87511 (-) 342 WP_264256133.1 hypothetical protein -
  N8E86_RS00490 (N8E86_00490) - 87690..88202 (-) 513 WP_264256134.1 DUF3158 family protein -
  N8E86_RS00495 (N8E86_00495) - 88243..88995 (-) 753 WP_264256135.1 PFL_4669 family integrating conjugative element protein -
  N8E86_RS00500 (N8E86_00500) - 89138..90364 (-) 1227 WP_264256136.1 STY4528 family pathogenicity island replication protein -
  N8E86_RS00505 (N8E86_00505) - 90528..91079 (-) 552 WP_264256137.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19159.20 Da        Isoelectric Point: 5.0100

>NTDB_id=635102 N8E86_RS00480 WP_039163718.1 86457..86969(-) (ssb) [Avibacterium paragallinarum strain AG21-0333]
MAGINKVIIVGNLGVDPEVRTMPNGEAVANMSVATSESWTDKTTGEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAGQATQVGAAQQGRNQYAQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDDQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=635102 N8E86_RS00480 WP_039163718.1 86457..86969(-) (ssb) [Avibacterium paragallinarum strain AG21-0333]
ATGGCAGGGATTAATAAAGTGATTATCGTGGGGAATCTTGGTGTAGATCCTGAAGTGAGAACAATGCCGAATGGCGAAGC
TGTGGCGAATATGAGTGTGGCAACGAGCGAAAGTTGGACAGATAAAACGACAGGTGAAAAACGTGAATTAACGGAATGGC
ATCGGATTGTATTTTATCGTCGTCAAGCTGAGATTGTCGGCGAGTATTTACGCAAAGGCTCGAAAGTCTATGTCGAAGGG
CGACTAAGAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGATACACCACAGAAATCCAAGGCGATGTACTTCAAAT
GTTAGATAGCCGTCCTGAGCGCTATCAAGCAGGGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
CGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCGCCTATCCCTGAT
GATGGCTTTGACGATGATCAGATTCCTTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

62.295

100

0.671
  ssb Vibrio cholerae strain A1552

55.307

100

0.582
  ssb Neisseria meningitidis MC58

47.191

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.482