Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | LSP22_RS07515 | Genome accession | NZ_CP089064 |
| Coordinates | 1598416..1599288 (+) | Length | 290 a.a. |
| NCBI ID | WP_231822116.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain UNC_PaerCF35 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1593416..1604288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSP22_RS07490 (LSP22_07490) | tfpZ | 1593924..1594661 (-) | 738 | WP_023100229.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| LSP22_RS07495 (LSP22_07495) | pilE | 1594726..1595262 (-) | 537 | WP_277989274.1 | pilin | Machinery gene |
| LSP22_RS07505 (LSP22_07505) | pilB | 1595489..1597192 (+) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LSP22_RS07510 (LSP22_07510) | pilC | 1597196..1598413 (+) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| LSP22_RS07515 (LSP22_07515) | pilD | 1598416..1599288 (+) | 873 | WP_231822116.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| LSP22_RS07520 (LSP22_07520) | coaE | 1599285..1599896 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| LSP22_RS07525 (LSP22_07525) | yacG | 1599893..1600093 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| LSP22_RS07530 (LSP22_07530) | - | 1600130..1600339 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| LSP22_RS07535 (LSP22_07535) | - | 1600445..1601134 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| LSP22_RS07540 (LSP22_07540) | - | 1601131..1601601 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| LSP22_RS07545 (LSP22_07545) | - | 1601598..1602023 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| LSP22_RS07550 (LSP22_07550) | - | 1602156..1602785 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| LSP22_RS07555 (LSP22_07555) | - | 1602782..1603231 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| LSP22_RS07560 (LSP22_07560) | - | 1603257..1603427 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31844.82 Da Isoelectric Point: 7.7068
>NTDB_id=635012 LSP22_RS07515 WP_231822116.1 1598416..1599288(+) (pilD) [Pseudomonas aeruginosa strain UNC_PaerCF35]
MQLTDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKGAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MQLTDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKGAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=635012 LSP22_RS07515 WP_231822116.1 1598416..1599288(+) (pilD) [Pseudomonas aeruginosa strain UNC_PaerCF35]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGGCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGGCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.837 |
97.241 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.071 |
96.552 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
51.071 |
96.552 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.929 |
96.552 |
0.472 |