Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LSO60_RS15405 Genome accession   NZ_CP089051
Coordinates   3250787..3251350 (-) Length   187 a.a.
NCBI ID   WP_004991990.1    Uniprot ID   A0A2N6VGP2
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3245787..3256350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS15390 (LSO60_15370) - 3247283..3248245 (-) 963 WP_263512554.1 VOC family protein -
  LSO60_RS15395 (LSO60_15375) - 3248307..3249143 (-) 837 WP_263512555.1 fumarylacetoacetate hydrolase family protein -
  LSO60_RS15400 (LSO60_15380) - 3249394..3250110 (+) 717 WP_263512556.1 TetR/AcrR family transcriptional regulator -
  LSO60_RS15405 (LSO60_15385) ssb 3250787..3251350 (-) 564 WP_004991990.1 single-stranded DNA-binding protein Machinery gene
  LSO60_RS15410 (LSO60_15390) - 3251402..3252766 (-) 1365 WP_263512557.1 MFS transporter -
  LSO60_RS15415 (LSO60_15395) - 3252910..3253989 (-) 1080 WP_151722751.1 DUF475 domain-containing protein -
  LSO60_RS15420 (LSO60_15400) tenA 3254184..3254855 (+) 672 WP_263512558.1 thiaminase II -
  LSO60_RS15425 (LSO60_15405) - 3254920..3255204 (-) 285 WP_263512559.1 YciI family protein -
  LSO60_RS15430 (LSO60_15410) - 3255225..3255569 (-) 345 WP_263512560.1 GlpM family protein -
  LSO60_RS15435 (LSO60_15415) - 3255776..3256150 (+) 375 WP_263512561.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20541.27 Da        Isoelectric Point: 6.4820

>NTDB_id=634837 LSO60_RS15405 WP_004991990.1 3250787..3251350(-) (ssb) [Acinetobacter ursingii strain RIVM_C010559]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSRQQGDQAMGGGNDFNQPRFNNAPQQSGYGQNNGSNQGNYANNSSGGYGNA
GNNNPGGFAPKAPAAPAPSDLDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=634837 LSO60_RS15405 WP_004991990.1 3250787..3251350(-) (ssb) [Acinetobacter ursingii strain RIVM_C010559]
ATGCGTGGTGTGAATAAAGTTATTTTAGTTGGTACTTTAGGACGTGATCCAGAAACCAAAACTTTTCCAAATGGAGGTTC
ACTGACTCAGTTCTCAATTGCGACCAGTGAATCGTGGACAGATAAAAATACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTCTTGCATAATCGTTTAGGGGAAATTGCACAGCAATATTTGCGTAAAGGATCAAAAGTTTATATTGAAGGT
TCTTTGCGTACTCGCCAGTGGACGGACCAAAACGGACAGGAACGCTATACCACTGAAATTCGTGGTGAGCAAATGCAGAT
GTTGGATTCTCGTCAGCAAGGGGATCAGGCAATGGGTGGTGGCAATGATTTTAATCAGCCACGTTTTAATAATGCTCCAC
AACAGTCTGGCTATGGTCAAAATAATGGCTCTAATCAGGGTAACTATGCCAATAATTCTTCTGGCGGTTATGGCAATGCG
GGCAACAATAATCCAGGCGGTTTTGCGCCAAAAGCACCTGCTGCACCAGCGCCTTCTGATTTGGATGATGATTTACCGTT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6VGP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.08

100

0.551
  ssb Vibrio cholerae strain A1552

45.596

100

0.471
  ssb Neisseria meningitidis MC58

39.572

100

0.396
  ssb Neisseria gonorrhoeae MS11

39.572

100

0.396