Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LSO59_RS16245 Genome accession   NZ_CP089038
Coordinates   3477804..3478367 (-) Length   187 a.a.
NCBI ID   WP_004991990.1    Uniprot ID   A0A2N6VGP2
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3472804..3483367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS16230 (LSO59_16210) - 3474307..3475269 (-) 963 WP_263505618.1 VOC family protein -
  LSO59_RS16235 (LSO59_16215) - 3475331..3476167 (-) 837 WP_004991982.1 fumarylacetoacetate hydrolase family protein -
  LSO59_RS16240 (LSO59_16220) - 3476418..3477113 (+) 696 WP_010588970.1 TetR/AcrR family transcriptional regulator -
  LSO59_RS16245 (LSO59_16225) ssb 3477804..3478367 (-) 564 WP_004991990.1 single-stranded DNA-binding protein Machinery gene
  LSO59_RS16250 (LSO59_16230) - 3478419..3479783 (-) 1365 WP_010588969.1 MFS transporter -
  LSO59_RS16255 (LSO59_16235) - 3479927..3481006 (-) 1080 WP_004992003.1 DUF475 domain-containing protein -
  LSO59_RS16260 (LSO59_16240) tenA 3481201..3481872 (+) 672 WP_004992006.1 thiaminase II -
  LSO59_RS16265 (LSO59_16245) - 3481937..3482221 (-) 285 WP_004992008.1 YciI family protein -
  LSO59_RS16270 (LSO59_16250) - 3482242..3482586 (-) 345 WP_004992011.1 GlpM family protein -
  LSO59_RS16275 (LSO59_16255) - 3482793..3483167 (+) 375 WP_004992014.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20541.27 Da        Isoelectric Point: 6.4820

>NTDB_id=634756 LSO59_RS16245 WP_004991990.1 3477804..3478367(-) (ssb) [Acinetobacter ursingii strain RIVM_C011601]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSRQQGDQAMGGGNDFNQPRFNNAPQQSGYGQNNGSNQGNYANNSSGGYGNA
GNNNPGGFAPKAPAAPAPSDLDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=634756 LSO59_RS16245 WP_004991990.1 3477804..3478367(-) (ssb) [Acinetobacter ursingii strain RIVM_C011601]
ATGCGTGGTGTGAATAAAGTTATTTTAGTTGGTACTTTAGGACGTGATCCAGAAACCAAAACTTTTCCAAATGGAGGTTC
ACTGACTCAGTTTTCAATTGCGACCAGTGAATCTTGGACAGATAAAAATACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTCTTGCATAATCGTTTAGGGGAAATTGCACAGCAATATTTGCGTAAAGGATCAAAAGTTTATATTGAAGGT
TCTTTGCGTACTCGCCAGTGGACGGACCAAAACGGACAGGAACGCTATACCACTGAAATTCGTGGTGAGCAAATGCAGAT
GTTGGATTCTCGTCAGCAAGGGGATCAGGCAATGGGCGGTGGCAATGATTTTAATCAGCCACGTTTTAATAATGCTCCAC
AACAGTCTGGCTATGGTCAAAATAATGGCTCTAATCAGGGTAACTATGCCAATAATTCTTCTGGCGGTTATGGCAATGCG
GGCAACAATAATCCAGGCGGTTTTGCGCCAAAAGCACCTGCTGCACCAGCGCCTTCTGATTTGGATGATGATTTACCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6VGP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.08

100

0.551
  ssb Vibrio cholerae strain A1552

45.596

100

0.471
  ssb Neisseria meningitidis MC58

39.572

100

0.396
  ssb Neisseria gonorrhoeae MS11

39.572

100

0.396