Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LSG23_RS20265 Genome accession   NZ_CP088973
Coordinates   4054988..4055506 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain CMML20-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4054988..4064746 4054988..4055506 within 0


Gene organization within MGE regions


Location: 4054988..4064746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG23_RS20265 (LSG23_20170) ssbA 4054988..4055506 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  LSG23_RS20270 (LSG23_20175) rpsF 4055546..4055833 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  LSG23_RS20275 (LSG23_20180) ychF 4055945..4057045 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  LSG23_RS20280 (LSG23_20185) - 4057172..4059175 (-) 2004 WP_048367910.1 molybdopterin-dependent oxidoreductase -
  LSG23_RS20285 (LSG23_20190) - 4059222..4059428 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  LSG23_RS20290 (LSG23_20195) - 4059514..4060539 (-) 1026 WP_088005468.1 hypothetical protein -
  LSG23_RS20295 (LSG23_20200) - 4060707..4061174 (+) 468 WP_229873599.1 GNAT family N-acetyltransferase -
  LSG23_RS20300 (LSG23_20205) yyaC 4061348..4061962 (+) 615 WP_004392969.1 spore protease YyaC -
  LSG23_RS20305 (LSG23_20210) - 4061991..4062842 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein -
  LSG23_RS20310 (LSG23_20215) soj 4062835..4063596 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  LSG23_RS20315 (LSG23_20220) noc 4063895..4064746 (-) 852 WP_007409900.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=634340 LSG23_RS20265 WP_004392979.1 4054988..4055506(-) (ssbA) [Bacillus velezensis strain CMML20-16]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=634340 LSG23_RS20265 WP_004392979.1 4054988..4055506(-) (ssbA) [Bacillus velezensis strain CMML20-16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378