Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LRO84_RS01715 Genome accession   NZ_CP088955
Coordinates   365839..366648 (+) Length   269 a.a.
NCBI ID   WP_231762431.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360839..371648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS01685 (LRO84_01685) rpoZ 361590..361868 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LRO84_RS01690 (LRO84_01690) gmk 361941..362570 (-) 630 WP_003653783.1 guanylate kinase -
  LRO84_RS01695 (LRO84_01695) ispH 362693..363643 (+) 951 WP_003653781.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRO84_RS01700 (LRO84_01700) fimU 363814..364287 (+) 474 WP_003653780.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LRO84_RS01705 (LRO84_01705) pilV 364281..364841 (+) 561 WP_003653778.1 type IV pilus modification protein PilV Machinery gene
  LRO84_RS01710 (LRO84_01710) pilW 364841..365842 (+) 1002 WP_231762430.1 PilW family protein Machinery gene
  LRO84_RS01715 (LRO84_01715) pilX 365839..366648 (+) 810 WP_231762431.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LRO84_RS01720 (LRO84_01720) pilY1 366660..370514 (+) 3855 WP_231762432.1 PilC/PilY family type IV pilus protein Machinery gene
  LRO84_RS01725 (LRO84_01725) pilY2 370525..371007 (+) 483 WP_231762433.1 type IV pilin protein Machinery gene
  LRO84_RS01730 (LRO84_01730) pilE 371004..371429 (+) 426 WP_231762434.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28555.37 Da        Isoelectric Point: 7.3239

>NTDB_id=634195 LRO84_RS01715 WP_231762431.1 365839..366648(+) (pilX) [Acinetobacter calcoaceticus strain ARu19]
MTHLIHKSRSKEKGATLIVVLIILLVVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPISTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRHAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSAQRIRVITTAFLPVYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=634195 LRO84_RS01715 WP_231762431.1 365839..366648(+) (pilX) [Acinetobacter calcoaceticus strain ARu19]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACTCTTATTGTTGTGCTTATTATTTTATTGGTTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTAGCTATTGTTTCTTTAAAAGTTGCTACTAATAGCCAAGTTAGCCAATTAA
ATTTTCAATCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCTTAACTAATATTACTAATGTGATT
GGTGCCGCGCTCAAAGAGCACGAAAGTAACCCTGGCGCAGAATACAACTTTTGTTATAAGCCTATTTCTACATCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGTCGTCGAAGATGGGGGAGTGGCAG
GTTTTTGTGATTTAACAAGTGACTATGGAAGTAATCGCCATGCGGTGGTTACACAAGTTGCCGTAAGTATTCCAACAGAT
GCTGCAAGTGATATTCCTGGTTCAAATTTACCACGGGGAACAAACACCTCTGAAGGTACACAACTACCTAAAAGCATGCT
ATCTGCGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGTCTATGCATCTACCTCTATAGAAACATTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACTGCATTAACGGCTAAGCAAACATTGGCGGAGTGT
TTGGCTAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTTACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907