Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LRO84_RS01700 Genome accession   NZ_CP088955
Coordinates   363814..364287 (+) Length   157 a.a.
NCBI ID   WP_003653780.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358814..369287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS01675 (LRO84_01675) - 359276..361381 (-) 2106 WP_231762429.1 RelA/SpoT family protein -
  LRO84_RS01685 (LRO84_01685) rpoZ 361590..361868 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  LRO84_RS01690 (LRO84_01690) gmk 361941..362570 (-) 630 WP_003653783.1 guanylate kinase -
  LRO84_RS01695 (LRO84_01695) ispH 362693..363643 (+) 951 WP_003653781.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LRO84_RS01700 (LRO84_01700) fimU 363814..364287 (+) 474 WP_003653780.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LRO84_RS01705 (LRO84_01705) pilV 364281..364841 (+) 561 WP_003653778.1 type IV pilus modification protein PilV Machinery gene
  LRO84_RS01710 (LRO84_01710) pilW 364841..365842 (+) 1002 WP_231762430.1 PilW family protein Machinery gene
  LRO84_RS01715 (LRO84_01715) pilX 365839..366648 (+) 810 WP_231762431.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16898.61 Da        Isoelectric Point: 8.5281

>NTDB_id=634192 LRO84_RS01700 WP_003653780.1 363814..364287(+) (fimU) [Acinetobacter calcoaceticus strain ARu19]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTASNTPT
SLNWKIASNNTLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=634192 LRO84_RS01700 WP_003653780.1 363814..364287(+) (fimU) [Acinetobacter calcoaceticus strain ARu19]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTCATGGTAACGATTGCGGTAATGGCTATTATTGCGAT
GATGGCTGCGCCGTCTATGTCGAATTTGTTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTGT
CTGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTCAAATACACCAACT
TCTTTGAATTGGAAAATTGCTTCCAACAACACTCTTGAGCTCAAAAATATAGCTGCTGATGGTACGCAAAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACTAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTGACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

90.446

100

0.904