Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LRO84_RS01730 Genome accession   NZ_CP088955
Coordinates   371004..371429 (+) Length   141 a.a.
NCBI ID   WP_231762434.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366004..376429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS01720 (LRO84_01720) pilY1 366660..370514 (+) 3855 WP_231762432.1 PilC/PilY family type IV pilus protein Machinery gene
  LRO84_RS01725 (LRO84_01725) pilY2 370525..371007 (+) 483 WP_231762433.1 type IV pilin protein Machinery gene
  LRO84_RS01730 (LRO84_01730) pilE 371004..371429 (+) 426 WP_231762434.1 type IV pilin protein Machinery gene
  LRO84_RS01735 (LRO84_01735) rpsP 371577..371828 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LRO84_RS01740 (LRO84_01740) rimM 371850..372398 (+) 549 WP_009392005.1 ribosome maturation factor RimM -
  LRO84_RS01745 (LRO84_01745) trmD 372441..373196 (+) 756 WP_231762435.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LRO84_RS01750 (LRO84_01750) rplS 373416..373784 (+) 369 WP_231762436.1 50S ribosomal protein L19 -
  LRO84_RS01755 (LRO84_01755) - 373838..374779 (-) 942 WP_231763342.1 lipase family alpha/beta hydrolase -
  LRO84_RS01760 (LRO84_01760) - 374897..375928 (-) 1032 WP_231762437.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15199.39 Da        Isoelectric Point: 7.8471

>NTDB_id=634198 LRO84_RS01730 WP_231762434.1 371004..371429(+) (pilE) [Acinetobacter calcoaceticus strain ARu19]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKIVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATTSQAGDGIICLNDQGQKFWAKGATNCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=634198 LRO84_RS01730 WP_231762434.1 371004..371429(+) (pilE) [Acinetobacter calcoaceticus strain ARu19]
ATGAAGAATGGTTTTACCCTGATAGAAATCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCTACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATAGTTCACAACCGTTATCCATCGAATGCGACGATTACTTCGATTTATGGGTCTAGTGTCAGCCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTCGCCAGCATAACTGATTCAAGTTGGGTGTTAACGGCTACGCCTATTGCTACTACTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGACAAAAATTTTGGGCAAAAGGTGCAACGAATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

86.525

100

0.865
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518