Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRO84_RS00995 Genome accession   NZ_CP088955
Coordinates   223065..223658 (+) Length   197 a.a.
NCBI ID   WP_004639902.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 218065..228658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS00970 (LRO84_00970) - 218135..218941 (-) 807 WP_231762342.1 SDR family NAD(P)-dependent oxidoreductase -
  LRO84_RS00975 (LRO84_00975) - 219044..219415 (-) 372 WP_003654012.1 MerR family transcriptional regulator -
  LRO84_RS00980 (LRO84_00980) tenA 219482..220156 (-) 675 WP_231762343.1 thiaminase II -
  LRO84_RS00985 (LRO84_00985) - 220419..221501 (+) 1083 WP_045433654.1 DUF475 domain-containing protein -
  LRO84_RS00990 (LRO84_00990) - 221649..223013 (+) 1365 WP_005038085.1 MFS transporter -
  LRO84_RS00995 (LRO84_00995) ssb 223065..223658 (+) 594 WP_004639902.1 single-stranded DNA-binding protein Machinery gene
  LRO84_RS01000 (LRO84_01000) - 223832..224800 (-) 969 WP_231762344.1 alpha/beta fold hydrolase -
  LRO84_RS01005 (LRO84_01005) - 224962..225681 (+) 720 WP_231762345.1 helix-turn-helix transcriptional regulator -
  LRO84_RS01010 (LRO84_01010) - 225953..226423 (+) 471 WP_231762346.1 hypothetical protein -
  LRO84_RS01015 (LRO84_01015) - 226549..226872 (-) 324 WP_231762347.1 AzlD domain-containing protein -
  LRO84_RS01020 (LRO84_01020) - 226869..227564 (-) 696 WP_231762348.1 AzlC family ABC transporter permease -
  LRO84_RS01025 (LRO84_01025) - 227633..228181 (+) 549 WP_005044199.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21366.15 Da        Isoelectric Point: 6.4832

>NTDB_id=634185 LRO84_RS00995 WP_004639902.1 223065..223658(+) (ssb) [Acinetobacter calcoaceticus strain ARu19]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=634185 LRO84_RS00995 WP_004639902.1 223065..223658(+) (ssb) [Acinetobacter calcoaceticus strain ARu19]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACCTTTCCAAATGGGGGTTC
GTTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAATTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGGTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAATAACCAAGGTGGTGGTTATAACCAAAATAGTGGTGGCGGCTATGGCAGCAAC
CCAGCTGGTTTTGGTAATGGTGGCAACAGCCCGCAAGGTGGTGGCTTTGCTCCTAAAGCACCACAGCAACCAGCTTCTGC
ACCAGCAGATTTAGACGACGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.804

100

0.518
  ssb Vibrio cholerae strain A1552

44.059

100

0.452
  ssb Neisseria meningitidis MC58

39.487

98.985

0.391
  ssb Neisseria gonorrhoeae MS11

38.462

98.985

0.381