Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRO55_RS00995 Genome accession   NZ_CP088954
Coordinates   219437..220030 (+) Length   197 a.a.
NCBI ID   WP_004639902.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 214437..225030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS00970 (LRO55_00970) - 214505..215311 (-) 807 WP_151744146.1 SDR family NAD(P)-dependent oxidoreductase -
  LRO55_RS00975 (LRO55_00975) - 215414..215785 (-) 372 WP_231764433.1 MerR family transcriptional regulator -
  LRO55_RS00980 (LRO55_00980) tenA 215852..216526 (-) 675 WP_231764434.1 thiaminase II -
  LRO55_RS00985 (LRO55_00985) - 216791..217873 (+) 1083 WP_003654009.1 DUF475 domain-containing protein -
  LRO55_RS00990 (LRO55_00990) - 218021..219385 (+) 1365 WP_003654007.1 MFS transporter -
  LRO55_RS00995 (LRO55_00995) ssb 219437..220030 (+) 594 WP_004639902.1 single-stranded DNA-binding protein Machinery gene
  LRO55_RS01000 (LRO55_01000) - 220071..220394 (-) 324 WP_045433646.1 AzlD domain-containing protein -
  LRO55_RS01005 (LRO55_01005) - 220391..221086 (-) 696 WP_231764435.1 AzlC family ABC transporter permease -
  LRO55_RS01010 (LRO55_01010) - 221155..221703 (+) 549 WP_198496632.1 helix-turn-helix domain-containing protein -
  LRO55_RS01015 (LRO55_01015) - 222030..223472 (+) 1443 WP_231764436.1 amino acid permease -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21366.15 Da        Isoelectric Point: 6.4832

>NTDB_id=634143 LRO55_RS00995 WP_004639902.1 219437..220030(+) (ssb) [Acinetobacter calcoaceticus strain ACa13]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=634143 LRO55_RS00995 WP_004639902.1 219437..220030(+) (ssb) [Acinetobacter calcoaceticus strain ACa13]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACCTTTCCAAATGGGGGTTC
GTTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAGGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGTCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGGTTCGCTGGCGGCAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCAATGGTTATCAAAATAATAATAACCAAGGTGGTGGTTATAACCAAAATAGTGGTGGCGGCTATGGCAGTAAC
CCAGCTGGTTTTGGTAATGGTGGAAACAGCCCGCAAGGTGGTGGTTTTGCTCCAAAAGCTCCACAGCAACCAGCTTCTGC
ACCAGCAGATTTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.804

100

0.518
  ssb Vibrio cholerae strain A1552

44.059

100

0.452
  ssb Neisseria meningitidis MC58

39.487

98.985

0.391
  ssb Neisseria gonorrhoeae MS11

38.462

98.985

0.381