Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LRR79_RS02010 Genome accession   NZ_CP088953
Coordinates   517656..518732 (-) Length   358 a.a.
NCBI ID   WP_231758760.1    Uniprot ID   -
Organism   Microbulbifer elongatus strain DSM 6810     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512656..523732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR79_RS01985 aroK 513177..513698 (-) 522 WP_231759966.1 shikimate kinase AroK -
  LRR79_RS01990 pilQ 513698..515920 (-) 2223 WP_231758757.1 type IV pilus secretin PilQ family protein -
  LRR79_RS01995 - 515923..516450 (-) 528 WP_231758758.1 pilus assembly protein PilP -
  LRR79_RS02000 - 516447..517067 (-) 621 WP_231758759.1 type 4a pilus biogenesis protein PilO -
  LRR79_RS02005 - 517070..517651 (-) 582 WP_043319714.1 PilN domain-containing protein -
  LRR79_RS02010 pilM 517656..518732 (-) 1077 WP_231758760.1 pilus assembly protein PilM Machinery gene
  LRR79_RS02015 - 518888..521578 (+) 2691 WP_231758761.1 penicillin-binding protein 1A -
  LRR79_RS02020 - 521674..522165 (-) 492 WP_231758762.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38900.15 Da        Isoelectric Point: 4.3638

>NTDB_id=634119 LRR79_RS02010 WP_231758760.1 517656..518732(-) (pilM) [Microbulbifer elongatus strain DSM 6810]
MGMLPFLNKGPKAMLGLDISSTSVKLLELSRSGDKYRVESYATEPLPPNAVVDKNINDVGAIAEAIRKVVRRSKTRLRQA
AVAVSGSAVITKTLDMPADLNDDALEAQIALEADQYIPYPLDEVNLDFEVQGPSEKGEGQVEVLLAACRSENVEQRISAL
TEADLQPGVVDVEAYAIERAYTLLDNQFPAQEQLVVAVIDIGATMSALSVMVDGRTVYTREQLFGGRQLTDEIQRRYGLS
AEEATLAKRQGGSGLPDDYYPEVLEPFRDAVVQQVTRSLQFFYSSTSYSDVDYILLGGGVAAMEGLAELVGEKLNKPTLV
ANPFRGMSVASRVNRQALASEAPSLMIAAGLAMREREF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=634119 LRR79_RS02010 WP_231758760.1 517656..518732(-) (pilM) [Microbulbifer elongatus strain DSM 6810]
ATGGGGATGCTCCCTTTTCTCAACAAGGGCCCGAAAGCCATGCTTGGGCTCGATATTAGCTCCACCTCGGTCAAGTTGCT
CGAACTGAGTCGCAGTGGCGACAAATACCGGGTGGAAAGCTATGCAACCGAGCCTCTGCCACCCAATGCGGTGGTGGATA
AAAATATCAATGATGTGGGGGCGATTGCCGAAGCCATCCGCAAGGTGGTGCGCCGGTCCAAGACCCGTCTGCGCCAGGCT
GCGGTGGCGGTGTCCGGTTCTGCGGTCATCACCAAGACCCTGGATATGCCGGCGGACTTGAACGACGACGCGCTGGAGGC
TCAGATCGCGCTGGAGGCGGATCAATATATCCCCTACCCACTGGACGAGGTGAACCTGGACTTTGAAGTACAGGGGCCGT
CCGAGAAGGGTGAGGGGCAGGTTGAAGTGTTGTTGGCAGCCTGCCGCAGTGAGAACGTGGAGCAGCGTATTTCGGCGCTG
ACCGAGGCGGATCTGCAGCCCGGTGTGGTGGATGTCGAAGCCTACGCCATTGAGCGCGCCTACACCCTGCTGGATAACCA
GTTCCCTGCGCAGGAGCAGCTGGTGGTGGCGGTGATCGATATCGGCGCCACCATGAGTGCGCTTTCCGTGATGGTGGACG
GGCGCACCGTGTATACCCGCGAACAGCTGTTTGGTGGCCGCCAGCTTACCGACGAGATTCAGCGTCGCTACGGCCTGTCC
GCCGAAGAGGCCACCCTGGCCAAACGTCAGGGCGGCAGTGGCCTGCCGGACGATTACTATCCGGAAGTGCTCGAGCCGTT
CCGCGACGCAGTGGTTCAGCAGGTGACCCGCTCACTGCAATTCTTCTATTCCTCAACCTCATACAGCGATGTGGACTACA
TCCTGTTGGGCGGCGGTGTCGCCGCAATGGAGGGGCTCGCCGAGCTGGTAGGTGAAAAGCTCAACAAACCCACACTGGTG
GCCAATCCCTTCCGGGGTATGAGTGTCGCCTCGCGGGTGAATCGCCAGGCCCTGGCGAGCGAGGCGCCGTCCCTGATGAT
TGCCGCCGGCCTCGCCATGCGCGAAAGAGAGTTCTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.705

98.324

0.508
  comM Acinetobacter nosocomialis M2

51.705

98.324

0.508
  comM Acinetobacter baylyi ADP1

47.727

98.324

0.469
  pilM Legionella pneumophila strain ERS1305867

44.944

99.441

0.447