Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LSQ66_RS22945 Genome accession   NZ_CP088952
Coordinates   4995020..4995514 (+) Length   164 a.a.
NCBI ID   WP_231767480.1    Uniprot ID   -
Organism   Massilia endophytica strain DM-R-R2A-13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4990020..5000514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSQ66_RS22935 (LSQ66_22935) - 4991149..4991763 (+) 615 WP_231767478.1 TetR/AcrR family transcriptional regulator -
  LSQ66_RS22940 (LSQ66_22940) uvrA 4991994..4994846 (-) 2853 WP_231767479.1 excinuclease ABC subunit UvrA -
  LSQ66_RS22945 (LSQ66_22945) ssb 4995020..4995514 (+) 495 WP_231767480.1 single-stranded DNA-binding protein Machinery gene
  LSQ66_RS22950 (LSQ66_22950) - 4995565..4998099 (-) 2535 WP_231767481.1 P-loop NTPase fold protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17804.09 Da        Isoelectric Point: 5.9417

>NTDB_id=634115 LSQ66_RS22945 WP_231767480.1 4995020..4995514(+) (ssb) [Massilia endophytica strain DM-R-R2A-13]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSFRSKDKNTGEQKEVTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAQEMQMLGGRQGMGGGDAMGGDDMGYDAPPARPAPRPQAAAPAPRPAPRPAPNFSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=634115 LSQ66_RS22945 WP_231767480.1 4995020..4995514(+) (ssb) [Massilia endophytica strain DM-R-R2A-13]
ATGGCATCTGTCAACAAAGTCATCATCGTCGGCAACCTGGGCCGTGACCCGGAGATCCGCTACATGCCGAGCGGCGATGC
CATCGCCAATATTGCCGTGGCGACCTCCTTCCGCAGCAAGGACAAGAACACCGGTGAGCAGAAGGAAGTCACCGAGTGGC
ACCGCATCTCCTTCTTCGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGAAGAAAGGCTCTTCGGTCTACGTGGAAGGC
CGCCTGCAGACCCGCAAGTACACGGACAAGGATGGCGTGGAGAAGTACGCCACCGACATCATCGCCCAGGAAATGCAGAT
GCTGGGCGGCCGCCAGGGCATGGGCGGCGGCGATGCCATGGGCGGCGACGACATGGGCTACGACGCGCCGCCGGCCCGTC
CGGCGCCCCGTCCGCAAGCGGCTGCGCCTGCACCGCGCCCCGCTCCCCGTCCTGCGCCGAACTTCTCGGACATGGACGAC
GACATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.567
  ssb Neisseria meningitidis MC58

52.874

100

0.561
  ssb Neisseria gonorrhoeae MS11

52.299

100

0.555
  ssb Glaesserella parasuis strain SC1401

49.189

100

0.555