Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LQF09_RS17520 Genome accession   NZ_CP088935
Coordinates   3840850..3842316 (+) Length   488 a.a.
NCBI ID   WP_270068568.1    Uniprot ID   -
Organism   Thauera sp. WB-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3835850..3847316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF09_RS17490 (LQF09_17500) thiL 3836456..3837415 (+) 960 WP_270068566.1 thiamine-phosphate kinase -
  LQF09_RS17495 (LQF09_17505) - 3837495..3837977 (+) 483 WP_198291786.1 phosphatidylglycerophosphatase A -
  LQF09_RS17500 (LQF09_17510) pncC 3837982..3838470 (+) 489 WP_002933654.1 nicotinamide-nucleotide amidase -
  LQF09_RS17505 (LQF09_17515) recA 3838621..3839652 (+) 1032 WP_002939814.1 recombinase RecA Machinery gene
  LQF09_RS17510 (LQF09_17520) recX 3839669..3840118 (+) 450 WP_270068567.1 recombination regulator RecX -
  LQF09_RS17515 (LQF09_17525) lptB 3840105..3840827 (+) 723 WP_002933647.1 LPS export ABC transporter ATP-binding protein -
  LQF09_RS17520 (LQF09_17530) rpoN/rpoN1 3840850..3842316 (+) 1467 WP_270068568.1 RNA polymerase factor sigma-54 Machinery gene
  LQF09_RS17525 (LQF09_17535) raiA 3842334..3842657 (+) 324 WP_002933639.1 ribosome-associated translation inhibitor RaiA -
  LQF09_RS17530 (LQF09_17540) ptsN 3842794..3843279 (+) 486 WP_002933632.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LQF09_RS17535 (LQF09_17545) hprK 3843248..3844183 (+) 936 WP_002933626.1 HPr(Ser) kinase/phosphatase -
  LQF09_RS17540 (LQF09_17550) - 3844197..3846050 (+) 1854 WP_270068569.1 AsmA family protein -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 54070.89 Da        Isoelectric Point: 5.0134

>NTDB_id=634085 LQF09_RS17520 WP_270068568.1 3840850..3842316(+) (rpoN/rpoN1) [Thauera sp. WB-2]
MKPSLQLKLSQHLTLTPQLQQSIKLLQLSTIELNQEIERFLLENPMLERSDGDGVEFVPPLPPGSPPEHEARQQQANTPE
APASATDSDAGDHADHGSADEGMDWSNVGSGASSRSEDDDDVDYQELQAAGVSLREHLDQQVSLSPLSDRDRALVRFIIE
ALDDDGYLHQPLDELLELLPDDADVDVDDLSIALRHVQNLEPAGIGARSPSECLSLQLRTLPASATRTLALEIVDKHLEL
LAERNFVKLKKLTGCDDEALRAAHALICSLDPHPGSRYSNAETRYVLPDVVVRKLRGRWTVSLNQEAMPRLRINRLYASL
LQQNRGQGGGLSGQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDHGEVAMRPLTLREIADQLELHESTVSRVTTQK
YMASPRGVFELKYFFGSHVATDTGGAASSTAIRALIRQLVDAEDSKKPLSDAKIAEVLGQQGIVVARRTIAKYRESLNIP
PVSLRKSI

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=634085 LQF09_RS17520 WP_270068568.1 3840850..3842316(+) (rpoN/rpoN1) [Thauera sp. WB-2]
ATGAAACCAAGCCTCCAGCTCAAGCTCTCCCAGCACCTTACCCTGACGCCGCAGCTGCAGCAGTCGATCAAGCTGCTGCA
GCTGTCGACCATCGAGCTGAACCAGGAGATCGAGCGCTTCCTGCTCGAGAACCCGATGCTCGAGCGCAGCGACGGCGACG
GTGTCGAGTTCGTACCACCGCTTCCACCGGGCAGCCCCCCCGAACACGAGGCCAGACAGCAACAGGCGAACACCCCCGAG
GCGCCAGCCAGCGCTACGGACAGCGACGCCGGCGACCATGCCGACCATGGCAGCGCCGACGAAGGCATGGACTGGTCCAA
TGTCGGCAGCGGCGCATCGAGCCGCAGCGAGGACGACGACGACGTCGATTACCAGGAACTGCAGGCGGCCGGCGTCTCCC
TGCGTGAACACCTCGACCAGCAGGTGTCGCTGTCGCCGCTGTCAGACCGCGACCGCGCCCTCGTGCGCTTCATCATCGAA
GCCTTGGATGACGACGGCTACCTTCACCAGCCGCTCGATGAGCTCCTCGAACTGCTTCCGGACGACGCCGACGTCGATGT
CGATGACCTGAGCATCGCGCTGCGCCACGTACAGAACCTCGAGCCCGCAGGCATCGGCGCGCGCAGCCCCAGCGAATGCC
TGTCGCTGCAGCTCCGTACCCTGCCGGCTTCGGCGACGCGCACGCTCGCGCTCGAGATCGTCGACAAGCACCTCGAGCTG
CTCGCCGAGCGCAACTTCGTCAAGCTCAAGAAGCTGACCGGCTGCGACGACGAGGCCCTGCGCGCCGCCCATGCCCTGAT
CTGCAGCCTCGATCCCCACCCCGGCTCGCGTTACTCGAACGCCGAGACGCGCTACGTACTGCCGGATGTGGTCGTACGCA
AGCTGCGCGGGCGGTGGACGGTCAGCCTGAACCAGGAGGCAATGCCGCGTCTGCGCATCAACCGCCTGTATGCCAGCCTG
CTGCAGCAGAACCGCGGCCAGGGTGGCGGCCTGAGCGGACAGTTGCAGGAGGCACGCTGGCTGATCAAGAACGTGCAGCA
GCGCTTCGACACCATCCTCCGGGTGTCCCAGGCCATCGTTGACCAGCAGAGGCAGTTCTTCGATCATGGGGAGGTGGCAA
TGCGGCCACTCACCCTCCGGGAGATCGCGGACCAACTCGAGCTGCACGAGTCCACCGTGTCGCGCGTGACCACGCAGAAG
TACATGGCGAGTCCGCGCGGGGTGTTCGAACTCAAGTATTTCTTCGGTAGTCACGTCGCCACCGACACCGGTGGAGCGGC
CTCGTCTACGGCGATTCGCGCGCTGATTCGCCAACTGGTTGACGCCGAGGACAGCAAGAAGCCGCTGTCCGACGCCAAGA
TTGCCGAAGTCCTTGGCCAGCAGGGTATCGTGGTCGCACGGCGCACGATCGCCAAGTATCGCGAATCCCTCAATATCCCG
CCGGTCAGCCTGCGCAAATCCATCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(124-317)

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.199

100

0.594