Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQF09_RS15085 Genome accession   NZ_CP088935
Coordinates   3293174..3293671 (-) Length   165 a.a.
NCBI ID   WP_002931643.1    Uniprot ID   -
Organism   Thauera sp. WB-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3288174..3298671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF09_RS15065 (LQF09_15070) - 3289515..3290585 (-) 1071 WP_270068340.1 efflux RND transporter periplasmic adaptor subunit -
  LQF09_RS15070 (LQF09_15075) - 3290859..3291245 (-) 387 WP_002942770.1 CbiX/SirB N-terminal domain-containing protein -
  LQF09_RS15075 (LQF09_15080) - 3291242..3292081 (-) 840 WP_270068341.1 tRNA threonylcarbamoyladenosine dehydratase -
  LQF09_RS15080 (LQF09_15085) - 3292092..3293057 (-) 966 WP_002931646.1 MBL fold metallo-hydrolase -
  LQF09_RS15085 (LQF09_15090) ssb 3293174..3293671 (-) 498 WP_002931643.1 single-stranded DNA-binding protein Machinery gene
  LQF09_RS15090 (LQF09_15095) - 3293763..3294962 (-) 1200 WP_270068342.1 MFS transporter -
  LQF09_RS15095 (LQF09_15100) uvrA 3295071..3297905 (+) 2835 WP_270068343.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18092.06 Da        Isoelectric Point: 5.9624

>NTDB_id=634082 LQF09_RS15085 WP_002931643.1 3293174..3293671(-) (ssb) [Thauera sp. WB-2]
MASVNKVILVGNLGADPESRFAPSGDAICNIRLATTENWRDKATGERREATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQSGQDRYTTEIRADEMKMLGGRREGGDAPMRASEGGWDAPAPAAAAPRAPAQRPQPAAQPQQQPGGFGDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=634082 LQF09_RS15085 WP_002931643.1 3293174..3293671(-) (ssb) [Thauera sp. WB-2]
ATGGCATCCGTCAATAAAGTCATCCTGGTCGGCAACCTCGGTGCCGACCCGGAAAGCCGTTTCGCCCCGTCGGGCGACGC
GATCTGCAATATCCGTCTTGCCACCACCGAGAACTGGCGCGACAAAGCCACCGGCGAGCGCCGTGAAGCGACCGAATGGC
ATCGGGTGTCCTTCTACGGCAAGCTGGCAGAGATCGCTGGCCAGTATCTGCGCAAGGGCAGCCAGGTGTACATCGAGGGC
AGCCTGCGGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGACCGCTACACCACCGAGATCCGCGCTGACGAGATGAAGAT
GCTGGGCGGCCGTCGCGAAGGTGGTGACGCACCGATGCGCGCAAGCGAGGGTGGCTGGGACGCGCCCGCGCCGGCCGCTG
CCGCGCCGCGCGCACCCGCACAGCGCCCTCAGCCGGCAGCACAACCGCAGCAGCAGCCGGGCGGCTTTGGTGATTTCGAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60

100

0.655
  ssb Glaesserella parasuis strain SC1401

53.591

100

0.588
  ssb Neisseria meningitidis MC58

47.778

100

0.521
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.521