Detailed information NTG0633991

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LRK54_RS05020
• Genome accession: NZ_CP088922
• Coordinates: 1072525..1073913 (+)
• Length: 462 a.a.
• NCBI ID: WP_027490831.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW104-10B01
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1067525..1078913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK54_RS05010 (LRK54_05010)	-	1068821..1070089 (+)	1269	WP_027485333.1	MFS transporter	-
LRK54_RS05015 (LRK54_05015)	-	1070109..1072355 (+)	2247	WP_027485332.1	glycosyl hydrolase family 65 protein	-
LRK54_RS05020 (LRK54_05020)	pilR	1072525..1073913 (+)	1389	WP_027490831.1	sigma-54 dependent transcriptional regulator	Regulator
LRK54_RS05025 (LRK54_05025)	-	1073923..1075188 (-)	1266	WP_027490832.1	FtsX-like permease family protein	-
LRK54_RS05030 (LRK54_05030)	-	1075185..1076516 (-)	1332	WP_027490833.1	FtsX-like permease family protein	-
LRK54_RS05035 (LRK54_05035)	-	1076552..1078087 (-)	1536	WP_027490834.1	response regulator	-
LRK54_RS05040 (LRK54_05040)	-	1078185..1078631 (-)	447	WP_027490835.1	response regulator	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49981.17 Da
• Isoelectric Point: 5.9821

>NTDB_id=633991 LRK54_RS05020 WP_027490831.1 1072525..1073913(+) (pilR) [Rhodanobacter denitrificans strain FW104-10B01]
MNPQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVAEARRALAERSYDLCFTDMRLPDGSGHEVIELIAAEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEERRTGAAAAKTGDSSDRLIGDSTAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASVDKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGDSVGQLSPSAREALEAYDFPGNVRELENILERAMAMCDGSTIEAADLMLPQRSARISHEPAATGQ
PPAPVAAATGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1389 bp

>NTDB_id=633991 LRK54_RS05020 WP_027490831.1 1072525..1073913(+) (pilR) [Rhodanobacter denitrificans strain FW104-10B01]
ATGAACCCCCAGACCGTTTTGGTCATCGATGACGAACGCGACATCCGCGAACTGCTGACCATCACGCTGGGGCGAATGGA
CCTGCAGGTCGACGCCGTCGGCACCGTCGCCGAGGCGCGCCGCGCACTGGCCGAACGCAGTTATGACCTTTGCTTCACCG
ACATGCGGCTGCCCGACGGCAGCGGCCACGAGGTCATCGAGCTGATCGCCGCGGAGCATCCCGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCCGCGGTGAACGCGCTGAAGGCCGGCGCGTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGGCTGGTACGCACCGCGCTGCGCCTCGCCGAGGAACGGCGCACCGGCGCCGCCGCGGCGAAGA
CCGGCGACTCCAGCGACCGCCTGATCGGCGACTCCACCGCCATGCAGCAGGTGCGCGCCACCATCGGCAAGCTGGCGCGC
AACCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCCCGGCTGATCCACGAGCAGGGCCC
GCGCGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATC
GCAAGGGCAGCTTCACCGGCGCCAGCGTGGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAAGCGGTGCGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGACGTGCGCATCCTTTCCGCCACCCACAAGAACCTCGGCCAGCTGGTCGAACAGGGCCAGT
TCCGCCAGGACCTGTTCTACCGCATCAACGTGATCGAGCTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTGCCG
CAGTTGTCCGCATTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGACAGCGTGGGCCAGCTGTCGCCGTCCGCACGCGA
GGCGCTGGAGGCGTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGATGGCGATGTGCGACG
GCAGCACCATCGAGGCGGCCGACCTGATGCTGCCGCAGCGCAGCGCGCGGATCAGCCACGAGCCGGCCGCAACGGGACAG
CCGCCGGCACCCGTCGCGGCCGCCACCGGCGCGGACGGCGGCCTCGACGACTACATCAGCAACCTGGAGCGCACCGCCAT
CGTCAAGGCGCTGGAAGAATCGCGCTACAACAAGACCGCCGCCGCCCGCAAACTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTGAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Response regulator receiver domain (Response_reg) (6-114)

• Bacterial regulatory protein, Fis family (HTH_8) (420-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.823	100	0.608
pilR	Acinetobacter baumannii strain A118	47.403	100	0.474