Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA4_RS17125 Genome accession   NZ_CP104866
Coordinates   3721849..3722346 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PALA4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3716849..3727346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS17105 (PALA4_03379) pchD 3717633..3719276 (+) 1644 WP_003110568.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  PALA4_RS17110 (PALA4_03380) pchC 3719273..3720028 (+) 756 WP_003110569.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA4_RS17115 (PALA4_03381) pchB 3720028..3720333 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  PALA4_RS17120 (PALA4_03382) pchA 3720330..3721760 (+) 1431 WP_003110570.1 isochorismate synthase PchA -
  PALA4_RS17125 (PALA4_03383) ssb 3721849..3722346 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA4_RS17130 (PALA4_03384) - 3722363..3723751 (-) 1389 WP_003103910.1 MFS transporter -
  PALA4_RS17135 (PALA4_03385) uvrA 3723965..3726802 (+) 2838 WP_003110572.1 excinuclease ABC subunit UvrA Machinery gene
  PALA4_RS17140 (PALA4_03386) bfr 3726874..3727338 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=633991 PALA4_RS17125 WP_003114685.1 3721849..3722346(-) (ssb) [Pseudomonas aeruginosa strain PALA4]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=633991 PALA4_RS17125 WP_003114685.1 3721849..3722346(-) (ssb) [Pseudomonas aeruginosa strain PALA4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAAGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515