Detailed information NTG0633988

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LRK54_RS04250
• Genome accession: NZ_CP088922
• Coordinates: 900693..901859 (-)
• Length: 388 a.a.
• NCBI ID: WP_015446994.1
• Uniprot ID: -
• Organism: Rhodanobacter denitrificans strain FW104-10B01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 895693..906859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRK54_RS04235 (LRK54_04235)	-	896848..897540 (-)	693	WP_015446997.1	response regulator transcription factor	-
LRK54_RS04240 (LRK54_04240)	-	897686..899896 (+)	2211	WP_231378422.1	TonB-dependent siderophore receptor	-
LRK54_RS04245 (LRK54_04245)	-	900249..900626 (+)	378	WP_015446995.1	BON domain-containing protein	-
LRK54_RS04250 (LRK54_04250)	pilU	900693..901859 (-)	1167	WP_015446994.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LRK54_RS04255 (LRK54_04255)	pilT	902013..903050 (-)	1038	WP_007507061.1	type IV pilus twitching motility protein PilT	Machinery gene
LRK54_RS04260 (LRK54_04260)	proC	903419..904243 (+)	825	WP_015446993.1	pyrroline-5-carboxylate reductase	-
LRK54_RS04265 (LRK54_04265)	-	904240..904815 (+)	576	WP_007507063.1	YggT family protein	-
LRK54_RS04270 (LRK54_04270)	-	905470..906294 (-)	825	WP_037115662.1	cobalamin-binding protein	-
LRK54_RS04275 (LRK54_04275)	-	906299..906739 (-)	441	WP_015446991.1	secondary thiamine-phosphate synthase enzyme YjbQ	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 43408.83 Da
• Isoelectric Point: 6.7735

>NTDB_id=633988 LRK54_RS04250 WP_015446994.1 900693..901859(-) (pilU) [Rhodanobacter denitrificans strain FW104-10B01]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTIEELTLPPVIKQLAMTKRGIIVFVGATGSGKSTSLASMIGYRNQNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEIRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQQLIPTPDGKARRVAVEILLGTPLVQDYIRQGEIHKLKEVMKESTLLGMKTF
DQSLVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLEGVELEESRDAQNFSSNFLNR

Nucleotide

• Length: 1167 bp

>NTDB_id=633988 LRK54_RS04250 WP_015446994.1 900693..901859(-) (pilU) [Rhodanobacter denitrificans strain FW104-10B01]
ATGAGCGACTTCGATTTCACCTCATTCCTGAAGCTGATGGTGCACAAGAAGGCCTCCGACTTGTTCATCACGGCGGGCGT
CGCCCCCTCGATGAAAGTGCAGGGCCGGATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCATGAGTGCCAGTTCGCGATCTCCGCGCAAGGC
GTGGGCCGTTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGTATGGTGCTGCGCCGGATCGAGTCGAAGATCCC
CACCATCGAGGAACTGACGCTGCCGCCGGTGATCAAGCAACTGGCGATGACCAAGCGCGGCATCATCGTGTTCGTCGGCG
CCACCGGCTCGGGCAAATCGACCTCGCTGGCGTCGATGATCGGCTACCGCAACCAGAACTCGACCGGTCATATCATCACG
ATCGAGGACCCGATCGAGTACGTGCACAAGCACGAAGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACAACGCGCTGAAGAACACCCTGCGCCAGGCCCCGGACGTGATCATGATCGGCGAAATCCGCACCCGCGAGGGCA
TGGACCACGCGATCGCCTTTGCCGAAACCGGTCACCTGGTGCTGTGCACGCTGCACGCGAACAACGCCAACCAGGCGATG
GACCGCATCCTGCACTTCTTCCCCGAGGACCGCCGCCAGCAACTGCTGATGGACCTGTCGCTCAACCTGAAGGGCATCGT
GGCGCAGCAGCTGATCCCCACGCCCGACGGCAAGGCGCGCCGGGTCGCGGTGGAGATTCTGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAGGTGATGAAGGAGTCCACTCTGCTCGGCATGAAGACCTTC
GACCAGAGCCTGGTCGAGCTGTACCACGCCGGCGAGATCAGCTACGAGGACGCGCTGCGCTACGCCGACAGCTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGCGGCGACGCGCATACCCTGTCGCAAGGCCTGGAAGGCGTCGAGCTGGAGG
AAAGCCGCGACGCGCAGAACTTCAGCAGCAATTTCCTCAACCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (116-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.578	96.392	0.642
pilU	Acinetobacter baylyi ADP1	63.483	91.753	0.582
pilU	Vibrio cholerae strain A1552	52.809	91.753	0.485
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.129	95.876	0.394