Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRK32_RS03280 Genome accession   NZ_CP088920
Coordinates   734393..734902 (+) Length   169 a.a.
NCBI ID   WP_007510721.1    Uniprot ID   -
Organism   Rhodanobacter denitrificans strain FW104-10F02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 729393..739902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK32_RS03260 (LRK32_03260) - 729827..730444 (-) 618 WP_015446848.1 YceI family protein -
  LRK32_RS03265 (LRK32_03265) - 730815..731816 (-) 1002 WP_027490856.1 polyprenyl synthetase family protein -
  LRK32_RS03270 (LRK32_03270) - 731947..733149 (+) 1203 WP_027490855.1 MFS transporter -
  LRK32_RS03275 (LRK32_03275) - 733252..734229 (+) 978 WP_196802031.1 DedA family protein/thiosulfate sulfurtransferase GlpE -
  LRK32_RS03280 (LRK32_03280) ssb 734393..734902 (+) 510 WP_007510721.1 single-stranded DNA-binding protein Machinery gene
  LRK32_RS03285 (LRK32_03285) - 734964..736268 (-) 1305 WP_027490854.1 S8 family serine peptidase -
  LRK32_RS03290 (LRK32_03290) - 736265..736900 (-) 636 WP_027490853.1 hypothetical protein -
  LRK32_RS03295 (LRK32_03295) - 736897..737481 (-) 585 WP_027490852.1 sigma-70 family RNA polymerase sigma factor -
  LRK32_RS03300 (LRK32_03300) - 737558..738526 (-) 969 WP_231378427.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18112.87 Da        Isoelectric Point: 5.9715

>NTDB_id=633941 LRK32_RS03280 WP_007510721.1 734393..734902(+) (ssb) [Rhodanobacter denitrificans strain FW104-10F02]
MARGVNKVILIGNLGSDPEVRSTGSGTTVCSFSLATSESWTDKQSGEKQERTEWHRIKIFGRLGEIAGEYLKKGRQVYIE
GSIRTDKFTGKDGVEKYFTDIIASEMQMLGSNEGAGAGGGYQRERPQGGQRQGGGYGGGQSRGNDDRGPSRPSPSAPADN
GFADDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=633941 LRK32_RS03280 WP_007510721.1 734393..734902(+) (ssb) [Rhodanobacter denitrificans strain FW104-10F02]
ATGGCACGTGGCGTCAACAAAGTCATCCTGATCGGCAACCTGGGCTCGGACCCCGAGGTGCGCAGCACCGGCAGCGGCAC
CACGGTGTGCAGCTTCAGCCTGGCCACTTCCGAGTCGTGGACCGACAAGCAGAGCGGCGAAAAGCAGGAACGCACCGAGT
GGCACCGGATCAAGATCTTCGGCCGCCTCGGCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCAGGTCTACATCGAG
GGTTCCATCCGCACTGACAAGTTCACCGGCAAGGATGGCGTGGAGAAGTATTTCACCGACATCATCGCCAGCGAGATGCA
GATGCTCGGCAGCAACGAGGGCGCCGGCGCTGGCGGCGGTTACCAGCGCGAGCGCCCGCAGGGCGGCCAGCGCCAGGGCG
GCGGCTACGGCGGCGGCCAGTCGCGCGGCAACGACGACCGCGGTCCGTCGCGCCCCTCGCCATCGGCCCCGGCCGACAAC
GGTTTCGCGGATGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.159

100

0.491
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.485
  ssb Vibrio cholerae strain A1552

44.633

100

0.467
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.456