Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRK24_RS16235 Genome accession   NZ_CP088919
Coordinates   3531299..3531808 (-) Length   169 a.a.
NCBI ID   WP_007510721.1    Uniprot ID   -
Organism   Rhodanobacter denitrificans strain DSM-24678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3526299..3536808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRK24_RS16215 (LRK24_16215) - 3527677..3528645 (+) 969 WP_231381807.1 hypothetical protein -
  LRK24_RS16220 (LRK24_16220) - 3528722..3529306 (+) 585 WP_007510715.1 sigma-70 family RNA polymerase sigma factor -
  LRK24_RS16225 (LRK24_16225) - 3529303..3529938 (+) 636 WP_007510717.1 hypothetical protein -
  LRK24_RS16230 (LRK24_16230) - 3529935..3531239 (+) 1305 WP_007510719.1 S8 family serine peptidase -
  LRK24_RS16235 (LRK24_16235) ssb 3531299..3531808 (-) 510 WP_007510721.1 single-stranded DNA-binding protein Machinery gene
  LRK24_RS16240 (LRK24_16240) - 3531972..3532949 (-) 978 WP_202946745.1 DedA family protein/thiosulfate sulfurtransferase GlpE -
  LRK24_RS16245 (LRK24_16245) - 3533052..3534254 (-) 1203 WP_007510725.1 MFS transporter -
  LRK24_RS16250 (LRK24_16250) - 3534385..3535386 (+) 1002 WP_007510727.1 polyprenyl synthetase family protein -
  LRK24_RS16255 (LRK24_16255) - 3535757..3536374 (+) 618 WP_007510730.1 YceI family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18112.87 Da        Isoelectric Point: 5.9715

>NTDB_id=633938 LRK24_RS16235 WP_007510721.1 3531299..3531808(-) (ssb) [Rhodanobacter denitrificans strain DSM-24678]
MARGVNKVILIGNLGSDPEVRSTGSGTTVCSFSLATSESWTDKQSGEKQERTEWHRIKIFGRLGEIAGEYLKKGRQVYIE
GSIRTDKFTGKDGVEKYFTDIIASEMQMLGSNEGAGAGGGYQRERPQGGQRQGGGYGGGQSRGNDDRGPSRPSPSAPADN
GFADDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=633938 LRK24_RS16235 WP_007510721.1 3531299..3531808(-) (ssb) [Rhodanobacter denitrificans strain DSM-24678]
ATGGCACGTGGCGTCAACAAAGTCATCCTGATCGGCAACCTGGGCTCGGACCCCGAGGTGCGCAGCACCGGCAGCGGCAC
CACGGTGTGCAGCTTCAGCCTGGCCACTTCCGAGTCGTGGACCGACAAGCAGAGCGGCGAAAAGCAGGAACGCACCGAGT
GGCACCGGATCAAGATCTTCGGCCGCCTCGGCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCAGGTCTACATCGAG
GGTTCCATCCGCACTGACAAGTTCACCGGCAAGGATGGCGTGGAGAAGTATTTCACCGACATCATCGCCAGCGAGATGCA
GATGCTCGGCAGCAACGAGGGCGCCGGCGCTGGCGGCGGTTACCAGCGCGAGCGCCCGCAGGGCGGCCAGCGCCAGGGCG
GCGGCTACGGCGGCGGCCAGTCGCGCGGCAACGACGACCGCGGTCCGTCGCGCCCCTCGCCATCGGCCCCGGCCGACAAC
GGTTTCGCGGATGACGAGATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.159

100

0.491
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.485
  ssb Vibrio cholerae strain A1552

44.633

100

0.467
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.456