Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLE53_RS05765 Genome accession   NZ_CP088273
Coordinates   1181372..1181908 (+) Length   178 a.a.
NCBI ID   WP_112526678.1    Uniprot ID   -
Organism   Phyllobacterium sp. T1293     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1176372..1186908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE53_RS05745 (LLE53_005745) - 1176540..1176878 (-) 339 WP_008123000.1 P-II family nitrogen regulator -
  LLE53_RS05750 (LLE53_005750) - 1177137..1177937 (-) 801 WP_227986606.1 DUF72 domain-containing protein -
  LLE53_RS05755 (LLE53_005755) uvrA 1178012..1180933 (-) 2922 WP_227986607.1 excinuclease ABC subunit UvrA -
  LLE53_RS05760 (LLE53_005760) - 1181046..1181354 (+) 309 WP_162700299.1 hypothetical protein -
  LLE53_RS05765 (LLE53_005765) ssb 1181372..1181908 (+) 537 WP_112526678.1 single-stranded DNA-binding protein Machinery gene
  LLE53_RS05770 (LLE53_005770) - 1181946..1182380 (+) 435 WP_227986608.1 YqaA family protein -
  LLE53_RS05775 (LLE53_005775) - 1182383..1182790 (-) 408 WP_112526904.1 DUF2000 family protein -
  LLE53_RS05780 (LLE53_005780) - 1182827..1183699 (+) 873 WP_113097180.1 AraC family transcriptional regulator -
  LLE53_RS05785 (LLE53_005785) - 1183764..1185059 (+) 1296 WP_227986609.1 NAD(P)/FAD-dependent oxidoreductase -
  LLE53_RS05790 (LLE53_005790) - 1185060..1185689 (-) 630 WP_091876942.1 MarC family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19356.12 Da        Isoelectric Point: 5.3611

>NTDB_id=633678 LLE53_RS05765 WP_112526678.1 1181372..1181908(+) (ssb) [Phyllobacterium sp. T1293]
MAGSVNKVILVGNLGKDPEVRKMGSGDPVVSFSLATSESWRDKNSGERKEKTEWHNIVIFNDNLTKVAEQYLKKGMKVYI
EGSLQTRKWQDQTGNERYTTEIVLQKFRGELQMLDSRGEGAGSGGGRSFDNSGRGQVSDNGDYGSDFGRSSASSSNNSGG
GNNAGGNFSRDLDDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=633678 LLE53_RS05765 WP_112526678.1 1181372..1181908(+) (ssb) [Phyllobacterium sp. T1293]
ATGGCCGGTAGTGTCAACAAGGTGATTTTGGTGGGCAATCTGGGCAAGGACCCGGAAGTTCGGAAAATGGGTTCAGGTGA
TCCTGTTGTCAGTTTCAGCCTTGCCACGTCAGAAAGCTGGCGCGACAAGAACAGCGGCGAACGCAAGGAAAAAACCGAAT
GGCATAATATCGTTATTTTCAACGATAATCTGACGAAGGTTGCCGAGCAGTATCTGAAAAAAGGCATGAAGGTCTATATT
GAGGGCTCCTTGCAGACCCGCAAATGGCAGGACCAGACCGGCAATGAGCGTTACACGACGGAAATCGTGTTGCAGAAATT
CCGCGGCGAATTGCAGATGCTCGATTCACGCGGTGAGGGCGCCGGTTCCGGCGGCGGGCGTTCGTTTGACAATTCGGGCC
GTGGTCAGGTTTCCGATAATGGTGATTATGGTTCCGATTTCGGTCGTTCCAGCGCGTCCTCGTCAAACAATAGCGGCGGC
GGCAACAATGCAGGCGGCAATTTCTCGCGTGATCTTGATGACGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.517
  ssb Vibrio cholerae strain A1552

45.055

100

0.461
  ssb Neisseria gonorrhoeae MS11

41.53

100

0.427
  ssb Neisseria meningitidis MC58

41.53

100

0.427