Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LRS40_RS05520 Genome accession   NZ_CP088265
Coordinates   865905..866435 (-) Length   176 a.a.
NCBI ID   WP_032615999.1    Uniprot ID   A0A3E1ZQY9
Organism   Leclercia sp. G3L     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 860905..871435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS40_RS05500 (LRS40_05500) soxS 861371..861697 (+) 327 WP_039031951.1 superoxide response transcriptional regulator SoxS -
  LRS40_RS05505 (LRS40_05505) - 861694..863280 (-) 1587 WP_231313287.1 EAL domain-containing protein -
  LRS40_RS05510 (LRS40_05510) - 863619..864947 (-) 1329 WP_231313288.1 sensor domain-containing diguanylate cyclase -
  LRS40_RS05515 (LRS40_05515) - 865559..865840 (+) 282 WP_106993942.1 YjcB family protein -
  LRS40_RS05520 (LRS40_05520) ssb 865905..866435 (-) 531 WP_032615999.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LRS40_RS05525 (LRS40_05525) uvrA 866685..869507 (+) 2823 WP_231313289.1 excinuclease ABC subunit UvrA -
  LRS40_RS05530 (LRS40_05530) - 869511..869864 (-) 354 WP_142490045.1 MmcQ/YjbR family DNA-binding protein -
  LRS40_RS05535 (LRS40_05535) - 869867..870283 (-) 417 WP_142487855.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LRS40_RS05540 (LRS40_05540) aphA 870394..871107 (-) 714 WP_231313290.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18849.87 Da        Isoelectric Point: 5.2456

>NTDB_id=633569 LRS40_RS05520 WP_032615999.1 865905..866435(-) (ssb) [Leclercia sp. G3L]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQPSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=633569 LRS40_RS05520 WP_032615999.1 865905..866435(-) (ssb) [Leclercia sp. G3L]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGCTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACCGAAGTGGTAGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAGCCGTCTGCACCG
GCGCAGTCCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1ZQY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.602
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472