Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | STP1_RS07560 | Genome accession | NC_022737 |
| Coordinates | 1568585..1569100 (+) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus pasteuri SP1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1566817..1581093 | 1568585..1569100 | within | 0 |
Gene organization within MGE regions
Location: 1566817..1581093
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STP1_RS07545 (STP1_1476) | - | 1566817..1567008 (-) | 192 | WP_002451523.1 | hypothetical protein | - |
| STP1_RS07550 (STP1_1477) | - | 1567070..1567891 (-) | 822 | WP_023374529.1 | GH25 family lysozyme | - |
| STP1_RS07555 (STP1_1478) | rpsF | 1568267..1568563 (+) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| STP1_RS07560 (STP1_1479) | ssbA | 1568585..1569100 (+) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| STP1_RS07565 (STP1_1480) | rpsR | 1569144..1569386 (+) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| STP1_RS07570 (STP1_1481) | - | 1569571..1570542 (-) | 972 | WP_023374530.1 | Abi family protein | - |
| STP1_RS07575 (STP1_1482) | - | 1570705..1571928 (-) | 1224 | WP_023374531.1 | site-specific integrase | - |
| STP1_RS07580 (STP1_1483) | - | 1571937..1572860 (-) | 924 | WP_023374532.1 | helix-turn-helix transcriptional regulator | - |
| STP1_RS07585 (STP1_1484) | - | 1573052..1573267 (+) | 216 | WP_023374533.1 | helix-turn-helix transcriptional regulator | - |
| STP1_RS07590 (STP1_1485) | - | 1573267..1573539 (+) | 273 | WP_023374534.1 | DDE transposase family protein | - |
| STP1_RS07595 (STP1_1486) | - | 1573749..1574108 (+) | 360 | WP_023374535.1 | hypothetical protein | - |
| STP1_RS07600 (STP1_1487) | - | 1574110..1574445 (+) | 336 | WP_023374536.1 | hypothetical protein | - |
| STP1_RS07605 (STP1_1488) | - | 1574545..1575417 (+) | 873 | WP_023374537.1 | primase alpha helix C-terminal domain-containing protein | - |
| STP1_RS07610 (STP1_1489) | - | 1575430..1576899 (+) | 1470 | WP_023374538.1 | virulence-associated E family protein | - |
| STP1_RS07615 (STP1_1490) | - | 1577210..1577572 (+) | 363 | WP_023374539.1 | hypothetical protein | - |
| STP1_RS07620 (STP1_1491) | - | 1577574..1578215 (+) | 642 | WP_023374540.1 | pathogenicity island protein | - |
| STP1_RS07625 (STP1_1492) | - | 1578626..1578973 (+) | 348 | WP_023374541.1 | hypothetical protein | - |
| STP1_RS07630 (STP1_1493) | - | 1578994..1579704 (+) | 711 | WP_023374542.1 | hypothetical protein | - |
| STP1_RS07635 (STP1_1494) | - | 1579765..1580223 (+) | 459 | WP_023374543.1 | pathogenicity island family protein | - |
| STP1_RS07640 (STP1_1495) | - | 1580226..1580567 (+) | 342 | WP_023374544.1 | helix-turn-helix transcriptional regulator | - |
| STP1_RS07645 (STP1_1496) | - | 1580572..1581093 (+) | 522 | WP_023374545.1 | terminase small subunit | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=63352 STP1_RS07560 WP_002466536.1 1568585..1569100(+) (ssbA) [Staphylococcus pasteuri SP1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=63352 STP1_RS07560 WP_002466536.1 1568585..1569100(+) (ssbA) [Staphylococcus pasteuri SP1]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |