Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LQ772_RS01550 Genome accession   NZ_CP088251
Coordinates   340199..341257 (+) Length   352 a.a.
NCBI ID   WP_275045769.1    Uniprot ID   -
Organism   Frateuria edaphi strain 5GH9-34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335199..346257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ772_RS01535 (LQ772_01535) - 335225..336520 (+) 1296 WP_231323363.1 citrate synthase -
  LQ772_RS01540 (LQ772_01540) - 336669..337343 (-) 675 WP_231323365.1 hypothetical protein -
  LQ772_RS01545 (LQ772_01545) - 337416..339947 (-) 2532 WP_231323367.1 penicillin-binding protein 1A -
  LQ772_RS01550 (LQ772_01550) pilM 340199..341257 (+) 1059 WP_275045769.1 pilus assembly protein PilM Machinery gene
  LQ772_RS01555 (LQ772_01555) - 341257..341898 (+) 642 WP_231323369.1 PilN domain-containing protein -
  LQ772_RS01560 (LQ772_01560) pilO 341895..342566 (+) 672 WP_231323371.1 type 4a pilus biogenesis protein PilO -
  LQ772_RS01565 (LQ772_01565) - 342563..343105 (+) 543 WP_231323372.1 pilus assembly protein PilP -
  LQ772_RS01570 (LQ772_01570) - 343159..345360 (+) 2202 WP_231323374.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37993.73 Da        Isoelectric Point: 4.6355

>NTDB_id=633512 LQ772_RS01550 WP_275045769.1 340199..341257(+) (pilM) [Frateuria edaphi strain 5GH9-34]
MGLFTPKKPSLIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALARSGSKLKHASAA
VAGSAVITRIVPMSGDLSEEDLEGQIQVEANQYIPYPIDEVSLDFEVMGPVRDNPDMNNVLLAASRTENVDMRVAALDLG
GLAAKVIDVEAFAMENAFAMLVDQLNVSRDALVAVVDIGATMTTLSVLRHQRTIYSREQVFGGKQLTDEIMRRYGLSYEE
AGRAKRKGGLPESYETEALEPFKEALIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGLCPMLEEQLGVPCMVANPLA
RMSLAPKVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=633512 LQ772_RS01550 WP_275045769.1 340199..341257(+) (pilM) [Frateuria edaphi strain 5GH9-34]
GTGGGTCTGTTTACACCCAAGAAGCCGTCGCTGATCGGCGTCGACATCAGTTCGACCGCGGTCAAGCTGCTACAGCTGAG
CCAGGCCGGTGGCCGTTATCGCGTGGAGCACTACGCGGTCGAGCCACTGCCCCCCAACGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGACGGGCGTTGGCGCGGTCCGGTTCCAAACTCAAGCACGCTTCGGCGGCG
GTGGCCGGCTCGGCCGTGATCACGCGCATCGTGCCGATGTCCGGGGATCTTTCCGAGGAAGACCTCGAGGGCCAGATCCA
GGTCGAGGCCAACCAGTACATTCCCTACCCGATCGACGAGGTCAGCCTCGATTTCGAGGTAATGGGGCCGGTGCGCGACA
ACCCGGACATGAACAACGTCCTGCTGGCCGCCTCGCGCACCGAGAACGTGGACATGCGCGTCGCCGCGCTGGACCTGGGT
GGCCTCGCCGCCAAGGTGATCGACGTGGAAGCCTTCGCGATGGAGAACGCCTTCGCGATGCTGGTCGACCAGCTCAACGT
CAGCCGCGATGCGCTGGTCGCCGTGGTCGACATCGGAGCCACCATGACCACGCTGTCGGTGCTGCGCCACCAGCGCACCA
TCTATTCGCGCGAACAGGTCTTCGGCGGCAAACAGCTCACTGACGAAATCATGCGTCGCTACGGCCTCTCCTACGAGGAG
GCCGGTCGCGCCAAACGCAAGGGCGGCCTGCCCGAGTCCTACGAGACCGAGGCGCTGGAGCCGTTCAAGGAAGCGTTGAT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTTCGCCGGCAGCGAGTACAGCAAGGTCGACCAGGTGGTGCTGGCCGGCG
GTTGCGCCTCGATCGAGGGCCTCTGCCCGATGCTGGAGGAACAGCTGGGCGTGCCGTGCATGGTGGCCAATCCGCTGGCG
CGCATGTCGCTGGCGCCCAAGGTGCAGGCGCAATCGCTGGCGCAGGATGCCCCCGCGCTGATGATCGCCGTCGGCCTGGC
GCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

52.011

98.864

0.514
  comM Acinetobacter nosocomialis M2

51.724

98.864

0.511
  comM Acinetobacter baylyi ADP1

50.571

99.432

0.503
  pilM Legionella pneumophila strain ERS1305867

43.626

100

0.437