Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LPC09_RS25505 Genome accession   NZ_CP088245
Coordinates   5118404..5118928 (-) Length   174 a.a.
NCBI ID   WP_098799524.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 5119529..5120980 5118404..5118928 flank 601


Gene organization within MGE regions


Location: 5118404..5120980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS25505 (LPC09_25505) ssbA 5118404..5118928 (-) 525 WP_098799524.1 single-stranded DNA-binding protein Machinery gene
  LPC09_RS25510 (LPC09_25510) rpsF 5118964..5119251 (-) 288 WP_098799528.1 30S ribosomal protein S6 -
  LPC09_RS25515 (LPC09_25515) - 5119529..5120980 (-) 1452 WP_231308761.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19060.72 Da        Isoelectric Point: 4.6437

>NTDB_id=633500 LPC09_RS25505 WP_098799524.1 5118404..5118928(-) (ssbA) [Metabacillus sp. B2-18]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFLNCVIWRKQAENVANFLKKGSLAGVDGRLQSR
SYEDQTGKRVYVTEVVAESVQFLEPRGASGGGAGGGNNNYNNNNNFGGYQENSGNQNPFGSDQNQRNQGRTSFDDDPFAN
DGKPIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=633500 LPC09_RS25505 WP_098799524.1 5118404..5118928(-) (ssbA) [Metabacillus sp. B2-18]
ATGTTGAATCGAGTTGTATTAGTTGGAAGACTAACAAAAGATCCAGATTTGCGATACACACCAAGTGGAGTAGCTGTTGC
TACCTTTACTCTTGCAGTAAACCGTACGTTTACAAACCAACAGGGTGAAAGAGAAGCTGATTTTCTTAACTGTGTGATTT
GGCGTAAACAAGCCGAAAATGTTGCGAACTTCCTTAAAAAAGGTAGTCTTGCAGGAGTTGACGGTCGTTTACAGTCACGT
AGCTATGAAGATCAAACTGGAAAACGAGTTTATGTAACAGAAGTTGTTGCAGAAAGTGTCCAATTCCTAGAGCCAAGAGG
AGCAAGTGGCGGCGGTGCCGGTGGCGGTAACAATAACTACAACAACAATAACAACTTTGGTGGGTACCAAGAGAATTCTG
GCAATCAAAATCCATTCGGTTCAGATCAAAATCAACGTAATCAAGGTCGTACAAGCTTTGATGACGATCCATTTGCAAAT
GATGGAAAACCTATTGATATATCTGACGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

75

100

0.759
  ssb Latilactobacillus sakei subsp. sakei 23K

59.659

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385
  ssb Glaesserella parasuis strain SC1401

35.359

100

0.368