Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LPC11_RS11930 Genome accession   NZ_CP088218
Coordinates   2446331..2446846 (-) Length   171 a.a.
NCBI ID   WP_002466536.1    Uniprot ID   A0A2V3ZFL8
Organism   Staphylococcus sp. HL28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2434340..2448361 2446331..2446846 within 0


Gene organization within MGE regions


Location: 2434340..2448361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC11_RS11845 (LPC11_11845) - 2434340..2434861 (-) 522 WP_023374545.1 terminase small subunit -
  LPC11_RS11850 (LPC11_11850) - 2434866..2435207 (-) 342 WP_023374544.1 helix-turn-helix transcriptional regulator -
  LPC11_RS11855 (LPC11_11855) - 2435210..2435668 (-) 459 WP_023374543.1 pathogenicity island family protein -
  LPC11_RS11860 (LPC11_11860) - 2435729..2436439 (-) 711 WP_023374542.1 hypothetical protein -
  LPC11_RS11865 (LPC11_11865) - 2436460..2436807 (-) 348 WP_023374541.1 hypothetical protein -
  LPC11_RS11870 (LPC11_11870) - 2437218..2437859 (-) 642 WP_023374540.1 pathogenicity island protein -
  LPC11_RS11875 (LPC11_11875) - 2437861..2438223 (-) 363 WP_023374539.1 hypothetical protein -
  LPC11_RS11880 (LPC11_11880) - 2438534..2440003 (-) 1470 WP_231307282.1 virulence-associated E family protein -
  LPC11_RS11885 (LPC11_11885) - 2440016..2440888 (-) 873 WP_023374537.1 primase alpha helix C-terminal domain-containing protein -
  LPC11_RS11890 (LPC11_11890) - 2440988..2441323 (-) 336 WP_023374536.1 hypothetical protein -
  LPC11_RS11895 (LPC11_11895) - 2441325..2441684 (-) 360 WP_023374535.1 hypothetical protein -
  LPC11_RS11900 (LPC11_11900) - 2441894..2442166 (-) 273 WP_023374534.1 DDE transposase family protein -
  LPC11_RS11905 (LPC11_11905) - 2442166..2442381 (-) 216 WP_104681485.1 helix-turn-helix transcriptional regulator -
  LPC11_RS11910 (LPC11_11910) - 2442573..2443496 (+) 924 WP_023374532.1 helix-turn-helix transcriptional regulator -
  LPC11_RS11915 (LPC11_11915) - 2443505..2444728 (+) 1224 WP_023374531.1 site-specific integrase -
  LPC11_RS11920 (LPC11_11920) - 2444891..2445904 (+) 1014 WP_231307283.1 Abi family protein -
  LPC11_RS11925 (LPC11_11925) rpsR 2446045..2446287 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  LPC11_RS11930 (LPC11_11930) ssbA 2446331..2446846 (-) 516 WP_002466536.1 single-stranded DNA-binding protein Machinery gene
  LPC11_RS11935 (LPC11_11935) rpsF 2446868..2447164 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  LPC11_RS11940 (LPC11_11940) - 2447540..2448361 (+) 822 WP_023374529.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18856.42 Da        Isoelectric Point: 4.7410

>NTDB_id=633335 LPC11_RS11930 WP_002466536.1 2446331..2446846(-) (ssbA) [Staphylococcus sp. HL28]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=633335 LPC11_RS11930 WP_002466536.1 2446331..2446846(-) (ssbA) [Staphylococcus sp. HL28]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTACGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V3ZFL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.313

100

0.38
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374