Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   T15_RS03740 Genome accession   NC_022665
Coordinates   739898..740839 (+) Length   313 a.a.
NCBI ID   WP_023369831.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 734898..745839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS03725 (T15_0713) - 735744..736781 (-) 1038 WP_023369827.1 3-deoxy-7-phosphoheptulonate synthase -
  T15_RS03730 (T15_0714) - 737082..737675 (-) 594 WP_002938116.1 DUF1361 domain-containing protein -
  T15_RS03735 (T15_0715) metG 737831..739834 (+) 2004 WP_023369829.1 methionine--tRNA ligase -
  T15_RS03740 (T15_0716) coiA 739898..740839 (+) 942 WP_023369831.1 competence protein CoiA Machinery gene
  T15_RS03745 (T15_0717) pepF 741069..742871 (+) 1803 WP_023369833.1 oligoendopeptidase F Regulator
  T15_RS03750 (T15_0718) - 742873..743313 (+) 441 WP_002938105.1 hypothetical protein -
  T15_RS03755 (T15_0719) - 743329..743877 (+) 549 WP_002938103.1 DUF6630 family protein -
  T15_RS03760 (T15_0720) - 743963..744682 (+) 720 WP_009910106.1 O-methyltransferase -
  T15_RS03765 (T15_0721) prsA 744743..745744 (+) 1002 WP_002938100.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36278.85 Da        Isoelectric Point: 7.6709

>NTDB_id=63303 T15_RS03740 WP_023369831.1 739898..740839(+) (coiA) [Streptococcus suis T15]
MLVALDEDGQVFNVLEHPAPQGRYSCPGCGGLVRYKSGKVLRSHFAHVILRDCTYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNNSLALEVQCSSLPISRLQLRTQAYHEAGFQVLWLLGNGLWIKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLDILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQYYGNIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=63303 T15_RS03740 WP_023369831.1 739898..740839(+) (coiA) [Streptococcus suis T15]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAACATCCTGCGCCGCAAGGTCGCTATTCTTGTCC
AGGTTGTGGAGGACTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAATCCTACGGGATTGCA
CATACTTTTCCGAGAATGAGTCAGCCCAGCATCTGTCACTTAAGTCTTGCCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTTAATAATAGTCTAGCTTTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAATGGCCTATGGATAAAAGAAAGATTAAGTAAATTACACAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGCCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGACATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
GCCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGTATTACGGCA
ATATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(20-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.244

99.681

0.521
  coiA Streptococcus pneumoniae TIGR4

50.962

99.681

0.508
  coiA Streptococcus pneumoniae Rx1

50.962

99.681

0.508
  coiA Streptococcus pneumoniae D39

50.962

99.681

0.508
  coiA Streptococcus pneumoniae R6

50.962

99.681

0.508
  coiA Lactococcus lactis subsp. cremoris KW2

41.562

100

0.425

Multiple sequence alignment