Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LQK05_RS02530 Genome accession   NZ_CP088157
Coordinates   539097..539666 (+) Length   189 a.a.
NCBI ID   WP_000872881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 199     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 534097..544666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQK05_RS02505 (LQK05_02505) cysE 535310..535957 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  LQK05_RS02510 (LQK05_02510) cysS 535941..537341 (+) 1401 WP_000631966.1 cysteine--tRNA ligase -
  LQK05_RS02515 (LQK05_02515) - 537334..537738 (+) 405 WP_000370185.1 Mini-ribonuclease 3 -
  LQK05_RS02520 (LQK05_02520) rlmB 537746..538492 (+) 747 WP_000390329.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LQK05_RS02525 (LQK05_02525) - 538492..539016 (+) 525 WP_000664732.1 NYN domain-containing protein -
  LQK05_RS02530 (LQK05_02530) sigH 539097..539666 (+) 570 WP_000872881.1 RNA polymerase sigma factor Regulator
  LQK05_RS02535 (LQK05_02535) rpmG 539781..539924 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LQK05_RS02540 (LQK05_02540) secE 539980..540162 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LQK05_RS02545 (LQK05_02545) nusG 540175..540723 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LQK05_RS02550 (LQK05_02550) rplK 540904..541326 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LQK05_RS02555 (LQK05_02555) rplA 541534..542226 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LQK05_RS02560 (LQK05_02560) rplJ 542498..542998 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  LQK05_RS02565 (LQK05_02565) rplL 543041..543409 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LQK05_RS02570 (LQK05_02570) - 543584..544192 (+) 609 WP_000020306.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23096.97 Da        Isoelectric Point: 9.6924

>NTDB_id=632965 LQK05_RS02530 WP_000872881.1 539097..539666(+) (sigH) [Staphylococcus aureus strain 199]
MKYDLTTQDSTIKRNNAINDKDFEKLVMNLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=632965 LQK05_RS02530 WP_000872881.1 539097..539666(+) (sigH) [Staphylococcus aureus strain 199]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGAATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979