Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CX511_RS03360 Genome accession   NZ_CP088149
Coordinates   707605..708120 (+) Length   171 a.a.
NCBI ID   WP_045182499.1    Uniprot ID   A0AB39AZG0
Organism   Pseudomonas sp. S06B 330     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 702605..713120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CX511_RS03345 bfr 702710..703174 (+) 465 WP_045182494.1 bacterioferritin -
  CX511_RS03350 uvrA 703237..706071 (-) 2835 WP_045182495.1 excinuclease ABC subunit UvrA -
  CX511_RS03355 - 706201..707595 (+) 1395 WP_045182497.1 MFS transporter -
  CX511_RS03360 ssb 707605..708120 (+) 516 WP_045182499.1 single-stranded DNA-binding protein Machinery gene
  CX511_RS03365 - 708262..709479 (+) 1218 WP_177409670.1 site-specific integrase -
  CX511_RS03370 - 709472..710986 (+) 1515 WP_101292009.1 site-specific integrase -
  CX511_RS03375 - 710979..712970 (+) 1992 WP_101292010.1 integrase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19113.23 Da        Isoelectric Point: 5.9314

>NTDB_id=632913 CX511_RS03360 WP_045182499.1 707605..708120(+) (ssb) [Pseudomonas sp. S06B 330]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQDGAQQQGGNNYNQAPRQQAPRPQQSAPQQRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=632913 CX511_RS03360 WP_045182499.1 707605..708120(+) (ssb) [Pseudomonas sp. S06B 330]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGTCAGGATCCAGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACTGACAAGCAGACTGGCCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTTTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCACAGAACCAGGATGGCGCGCAGCAGCAGGGTGGCAACAACTACAACCAGGCGCCAC
GCCAGCAGGCTCCGCGTCCACAGCAGTCGGCTCCGCAGCAGCGTCCGGCGCCTCAGCAGGCCGCACCGCAGCCAGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.608
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.532
  ssb Neisseria meningitidis MC58

48.864

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.864

100

0.503