Detailed information NTG0063283

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: F6Y13_RS01960
• Genome accession: NZ_AP020311
• Coordinates: 355954..356640 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692870.1
• Uniprot ID: Q8NW77
• Organism: Staphylococcus aureus strain KUH140013
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 350954..361640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6Y13_RS01945 (KUH140013_0345)	-	351066..353696 (+)	2631	WP_000425353.1	valine--tRNA ligase	-
F6Y13_RS01950 (KUH140013_0346)	-	353709..354980 (+)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
F6Y13_RS01955 (KUH140013_0347)	-	355250..355957 (+)	708	WP_000261115.1	prepilin peptidase	-
F6Y13_RS01960 (KUH140013_0348)	ysxA/radC	355954..356640 (+)	687	WP_000692870.1	RadC family protein	Machinery gene
F6Y13_RS01965 (KUH140013_0349)	-	356708..356992 (+)	285	WP_000171859.1	hypothetical protein	-
F6Y13_RS01970	-	357109..357306 (-)	198	WP_000025835.1	hypothetical protein	-
F6Y13_RS01975 (KUH140013_0350)	-	357466..357939 (+)	474	WP_001236735.1	DUF4930 family protein	-
F6Y13_RS01980	-	358013..358132 (+)	120	WP_000840602.1	hypothetical protein	-
F6Y13_RS01985 (KUH140013_0351)	mreC	358332..359174 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
F6Y13_RS01990 (KUH140013_0352)	mreD	359174..359704 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
F6Y13_RS01995 (KUH140013_0353)	rplU	359871..360179 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
F6Y13_RS02000 (KUH140013_0354)	-	360185..360505 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
F6Y13_RS02005 (KUH140013_0355)	rpmA	360517..360801 (+)	285	WP_000916187.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25311.28 Da
• Isoelectric Point: 7.0539

>NTDB_id=63283 F6Y13_RS01960 WP_000692870.1 355954..356640(+) (ysxA/radC) [Staphylococcus aureus strain KUH140013]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=63283 F6Y13_RS01960 WP_000692870.1 355954..356640(+) (ysxA/radC) [Staphylococcus aureus strain KUH140013]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

3D structure

• AlphaFold DB: Q8NW77

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377