Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPICUR_RS08050 Genome accession   NC_022664
Coordinates   1643511..1643969 (-) Length   152 a.a.
NCBI ID   WP_041382507.1    Uniprot ID   -
Organism   Spiribacter curvatus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1638511..1648969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPICUR_RS08035 (SPICUR_08120) deoD 1639423..1640136 (-) 714 WP_041381829.1 purine-nucleoside phosphorylase -
  SPICUR_RS10260 - 1640317..1640544 (+) 228 Protein_1589 hypothetical protein -
  SPICUR_RS10165 (SPICUR_08125) - 1640586..1640876 (+) 291 WP_257719856.1 HAD-IB family phosphatase -
  SPICUR_RS08045 (SPICUR_08130) - 1640878..1643514 (+) 2637 WP_023367876.1 AMP-binding protein -
  SPICUR_RS08050 (SPICUR_08135) ssb 1643511..1643969 (-) 459 WP_041382507.1 single-stranded DNA-binding protein Machinery gene
  SPICUR_RS08055 (SPICUR_08140) - 1644073..1645797 (-) 1725 WP_023367880.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase -
  SPICUR_RS08060 (SPICUR_08145) - 1645794..1646996 (-) 1203 WP_023367882.1 MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16350.16 Da        Isoelectric Point: 4.7790

>NTDB_id=63272 SPICUR_RS08050 WP_041382507.1 1643511..1643969(-) (ssb) [Spiribacter curvatus]
MARGVNKVILIGNLGADPEVRYSAAGSAITNARLATTDQWKDRQTGEQQEKTEWHRIVFFGRLAEISGEYLKKGSKIFVE
GRLQTRKWQGQDGQDKYTTEIVANDMQMLDGAGGGGMGGGAGGGMKQSAPASSQEPAPQTAPVDDFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=63272 SPICUR_RS08050 WP_041382507.1 1643511..1643969(-) (ssb) [Spiribacter curvatus]
ATGGCGCGTGGAGTCAATAAAGTCATTCTTATCGGTAATCTCGGCGCCGATCCCGAGGTCCGCTATTCCGCCGCGGGAAG
CGCGATCACCAACGCGCGACTCGCCACCACCGATCAGTGGAAGGACCGTCAGACCGGCGAGCAGCAGGAGAAGACCGAGT
GGCATCGGATCGTGTTTTTCGGCCGGCTGGCGGAGATCTCGGGTGAATACCTGAAAAAGGGCTCGAAGATATTCGTGGAG
GGACGGCTGCAGACCCGCAAATGGCAGGGTCAGGACGGTCAGGACAAGTACACGACGGAGATCGTGGCCAATGACATGCA
GATGCTCGATGGCGCCGGTGGTGGCGGCATGGGCGGTGGTGCCGGCGGCGGCATGAAGCAGTCCGCGCCCGCGTCGAGTC
AGGAGCCGGCCCCGCAGACTGCCCCGGTGGATGATTTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.612
  ssb Glaesserella parasuis strain SC1401

47.753

100

0.559
  ssb Neisseria meningitidis MC58

45.087

100

0.513
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.513

Multiple sequence alignment