Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LPA45_RS01805 Genome accession   NZ_CP088083
Coordinates   379286..379858 (+) Length   190 a.a.
NCBI ID   WP_367394839.1    Uniprot ID   -
Organism   Cupriavidus sp. Agwp_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374286..384858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA45_RS01795 (LPA45_01790) uvrA 374462..377326 (-) 2865 WP_317919960.1 excinuclease ABC subunit UvrA -
  LPA45_RS01800 (LPA45_01795) - 377759..379009 (+) 1251 WP_116317035.1 MFS transporter -
  LPA45_RS01805 (LPA45_01800) ssb 379286..379858 (+) 573 WP_367394839.1 single-stranded DNA-binding protein Machinery gene
  LPA45_RS01810 (LPA45_01805) - 380532..381002 (+) 471 WP_367394840.1 toll/interleukin-1 receptor domain-containing protein -
  LPA45_RS01815 (LPA45_01810) - 381510..382532 (-) 1023 WP_367394841.1 IS110 family transposase -
  LPA45_RS01820 (LPA45_01815) - 382691..383887 (+) 1197 WP_367394842.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 19462.14 Da        Isoelectric Point: 5.9467

>NTDB_id=632614 LPA45_RS01805 WP_367394839.1 379286..379858(+) (ssb) [Cupriavidus sp. Agwp_2]
MASVNKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVSMFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGDEGGFGGGGGGGGYSRDAQGGGGGGYGGGRGGQGGGQGGGQGGG
QGGGQGGGGARRPQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=632614 LPA45_RS01805 WP_367394839.1 379286..379858(+) (ssb) [Cupriavidus sp. Agwp_2]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCCGAAACCCGCTACATGCCCAGCGGCGACGC
CGTCACCAACCTCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGTCCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCGTTTCGATGTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACTCGACCGAAATTGTCGCCGACCAGATGCAGAT
GCTGGGCTCGCGCCAGGGCGGCGGCGGTGACGAAGGCGGCTTCGGCGGTGGCGGCGGTGGTGGTGGCTACAGCCGTGACG
CGCAAGGCGGCGGCGGTGGTGGTTACGGCGGCGGCCGTGGCGGCCAGGGCGGTGGCCAAGGCGGTGGCCAAGGCGGCGGC
CAGGGCGGTGGCCAGGGTGGTGGCGGTGCGCGCCGCCCGCAGCAGGCACCGTCGAACGGTTTCGAGGATATGGACGACGA
TATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.515

100

0.516
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.489
  ssb Neisseria gonorrhoeae MS11

42.632

100

0.426
  ssb Neisseria meningitidis MC58

42.857

99.474

0.426