Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQZ07_RS22020 Genome accession   NZ_CP088080
Coordinates   4769194..4769808 (-) Length   204 a.a.
NCBI ID   WP_152785827.1    Uniprot ID   -
Organism   Agarivorans sp. B2Z047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4743890..4769043 4769194..4769808 flank 151


Gene organization within MGE regions


Location: 4743890..4769808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQZ07_RS21915 (LQZ07_21915) - 4743890..4744330 (-) 441 WP_249483385.1 hypothetical protein -
  LQZ07_RS21920 (LQZ07_21920) - 4744466..4745044 (-) 579 WP_249483387.1 recombinase family protein -
  LQZ07_RS21925 (LQZ07_21925) - 4745381..4746160 (+) 780 WP_194164225.1 metallophosphoesterase -
  LQZ07_RS21930 (LQZ07_21930) - 4746338..4749052 (-) 2715 WP_152785860.1 TrlF family AAA-like ATPase -
  LQZ07_RS21935 (LQZ07_21935) - 4749398..4749880 (-) 483 WP_152785858.1 HEPN family nuclease -
  LQZ07_RS21940 (LQZ07_21940) - 4750085..4750444 (-) 360 WP_194164224.1 hypothetical protein -
  LQZ07_RS21945 (LQZ07_21945) - 4751334..4751666 (-) 333 WP_194164223.1 hypothetical protein -
  LQZ07_RS21950 (LQZ07_21950) - 4751797..4753812 (-) 2016 WP_152785854.1 hypothetical protein -
  LQZ07_RS21955 (LQZ07_21955) - 4753812..4754270 (-) 459 WP_152785852.1 hypothetical protein -
  LQZ07_RS21960 (LQZ07_21960) - 4754267..4755172 (-) 906 WP_152785850.1 hypothetical protein -
  LQZ07_RS21965 (LQZ07_21965) - 4755698..4756387 (-) 690 WP_152785848.1 hypothetical protein -
  LQZ07_RS21970 (LQZ07_21970) - 4756488..4757381 (-) 894 WP_152785846.1 DUF2971 domain-containing protein -
  LQZ07_RS21975 (LQZ07_21975) - 4757474..4758304 (-) 831 WP_152785844.1 hypothetical protein -
  LQZ07_RS21980 (LQZ07_21980) - 4758429..4759442 (-) 1014 WP_152785842.1 restriction endonuclease -
  LQZ07_RS21985 (LQZ07_21985) - 4760906..4761226 (-) 321 WP_152785840.1 helix-turn-helix domain-containing protein -
  LQZ07_RS21990 (LQZ07_21990) - 4761433..4761969 (+) 537 WP_152785838.1 hypothetical protein -
  LQZ07_RS21995 (LQZ07_21995) - 4761966..4763363 (+) 1398 WP_152785836.1 DEAD/DEAH box helicase -
  LQZ07_RS22000 (LQZ07_22000) - 4763390..4763884 (-) 495 WP_152785834.1 hypothetical protein -
  LQZ07_RS22005 (LQZ07_22005) - 4763888..4766104 (-) 2217 WP_152785832.1 hypothetical protein -
  LQZ07_RS22010 (LQZ07_22010) - 4766097..4767704 (-) 1608 WP_152785830.1 site-specific integrase -
  LQZ07_RS22015 (LQZ07_22015) - 4767694..4769043 (-) 1350 WP_152785829.1 site-specific integrase -
  LQZ07_RS22020 (LQZ07_22020) ssb 4769194..4769808 (-) 615 WP_152785827.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22192.46 Da        Isoelectric Point: 5.2358

>NTDB_id=632587 LQZ07_RS22020 WP_152785827.1 4769194..4769808(-) (ssb) [Agarivorans sp. B2Z047]
MATRGINKVILVGNLGQDPEVRFMPNGGAVANITIATSESWRDKQSGEQKERTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRQGGGQGQNMGGGAPQQQGNWGGQQQAAPQAAPAQQGGFQQQAP
QQQSPQQGGYQQQPKPAPAPQQAPQQATQQFNEPPMDFDDDIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=632587 LQZ07_RS22020 WP_152785827.1 4769194..4769808(-) (ssb) [Agarivorans sp. B2Z047]
ATGGCCACTCGGGGCATTAATAAAGTAATTTTGGTTGGTAACTTAGGACAAGATCCTGAAGTTCGTTTTATGCCAAACGG
AGGGGCCGTCGCCAATATTACTATTGCAACTTCAGAAAGCTGGAGAGACAAGCAAAGTGGTGAACAAAAAGAGCGTACTG
AATGGCACCGTGTAGTGTTGTTTGGCAAGTTAGCCGAAGTTGCAGGCGAGTACCTTAAGAAAGGTTCGCAAGTATACATT
GAAGGTCAATTACAAACACGTAAGTGGCAAGATCAAAGTGGTCAAGATCGTTACTCTACCGAAGTGGTTGTGCAGGGCTT
TAATGGCGTGATGCAAATGCTAGGTGGACGTCAAGGTGGTGGCCAAGGGCAAAACATGGGCGGTGGTGCTCCGCAGCAAC
AAGGTAACTGGGGCGGTCAACAACAAGCTGCGCCTCAAGCAGCCCCTGCTCAGCAAGGTGGTTTCCAGCAACAAGCTCCA
CAGCAGCAATCACCTCAGCAAGGTGGTTATCAGCAACAGCCTAAACCTGCTCCGGCACCTCAACAAGCTCCACAGCAGGC
AACTCAGCAGTTTAATGAGCCTCCTATGGACTTTGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.78

100

0.691
  ssb Glaesserella parasuis strain SC1401

52.195

100

0.525
  ssb Neisseria gonorrhoeae MS11

45.729

97.549

0.446
  ssb Neisseria meningitidis MC58

45.729

97.549

0.446