Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQF52_RS18140 Genome accession   NZ_CP088019
Coordinates   4000196..4000738 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium carotovorum strain 25.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3995196..4005738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF52_RS18130 (LQF52_18130) - 3996676..3997095 (-) 420 WP_119881361.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LQF52_RS18135 (LQF52_18135) uvrA 3997111..3999945 (-) 2835 WP_039470146.1 excinuclease ABC subunit UvrA -
  LQF52_RS18140 (LQF52_18140) ssb 4000196..4000738 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LQF52_RS18145 (LQF52_18145) - 4000896..4001507 (-) 612 WP_119881360.1 hypothetical protein -
  LQF52_RS18150 (LQF52_18150) - 4001752..4002207 (+) 456 WP_119881359.1 GNAT family N-acetyltransferase -
  LQF52_RS18155 (LQF52_18155) - 4002274..4003311 (-) 1038 WP_103198670.1 LacI family DNA-binding transcriptional regulator -
  LQF52_RS18160 (LQF52_18160) - 4003311..4004363 (-) 1053 WP_010295141.1 carbohydrate ABC transporter permease -
  LQF52_RS18165 (LQF52_18165) - 4004372..4005370 (-) 999 WP_010279314.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=632475 LQF52_RS18140 WP_039283288.1 4000196..4000738(+) (ssb) [Pectobacterium carotovorum strain 25.1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=632475 LQF52_RS18140 WP_039283288.1 4000196..4000738(+) (ssb) [Pectobacterium carotovorum strain 25.1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGATCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATT
GAAGGCGCACTGCAAACCCGGAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTGGTTGTTAACGTCGG
CGGCACCATGCAGATGTTAGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCAGCACAG
AACAGCGCTCCGGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461