Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   N5P33_RS09110 Genome accession   NZ_CP104720
Coordinates   1954462..1956474 (+) Length   670 a.a.
NCBI ID   WP_003104590.1    Uniprot ID   P72174
Organism   Pseudomonas aeruginosa strain NY4593     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949462..1961474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P33_RS09090 (N5P33_09090) - 1950344..1952341 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  N5P33_RS09095 (N5P33_09095) comEA/comE1 1952532..1952861 (+) 330 WP_023089349.1 ComEA family DNA-binding protein Machinery gene
  N5P33_RS09105 (N5P33_09105) - 1953078..1954274 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  N5P33_RS09110 (N5P33_09110) uvrB 1954462..1956474 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  N5P33_RS09115 (N5P33_09115) - 1956478..1957977 (-) 1500 WP_003130539.1 MDR family MFS transporter -
  N5P33_RS09120 (N5P33_09120) - 1958027..1959061 (-) 1035 WP_003104593.1 HlyD family secretion protein -
  N5P33_RS09125 (N5P33_09125) - 1959164..1960084 (+) 921 WP_003091419.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76067.31 Da        Isoelectric Point: 5.0950

>NTDB_id=632445 N5P33_RS09110 WP_003104590.1 1954462..1956474(+) (uvrB) [Pseudomonas aeruginosa strain NY4593]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRAGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYENELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=632445 N5P33_RS09110 WP_003104590.1 1954462..1956474(+) (uvrB) [Pseudomonas aeruginosa strain NY4593]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAACCGGAAGCCATCCGGCAGATGGTCGAGGGGCT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTGGGGGTGACGGGCTCTGGCAAGACTTTCAGCATCGCCAACGTGATTGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACCCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTC
CCGCACAATTCCGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCGTCTTCCGATACCTA
TATCGAGAAGGACTCCTCGATCAACGACCATATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGTCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGTGATCCCGCGTCCTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGTGAACTGCTGCGGCGACTGACCAGCCTGCAGTACACCCGCAACGACATGGATTT
CGCCCGTGCGACTTTCCGTGTGCGTGGCGATGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATTCGTGTCG
AGTTGTTCGACGACGAGGTGGAAAGCCTCTCGGCCTTCGATCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACCCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAGGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACCCGTTTCGACCTGG
AGATGATCCTCGAGCTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTATCTTTCCGGGCGGGCCCCCGGCGAGCCG
CCGCCGACGCTCTACGACTACCTGCCGGCCAACTCGCTGCTGGTTATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
TGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAGACCCTGGTGGAATACGGTTTCCGCCTGCCTTCGGCGCTGGACAACC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTCTCCGCCACCCCGGGCCCCTACGAGGCG
GAGCATGCCGGGCGGGTCATCGAGCAGGTGGTGCGTCCCACCGGGCTGGTCGATCCGGAGATCGAGGTACGTCCGGCGAT
GACCCAGGTGGACGACCTGCTCTCGCAGATCCGCCAGCGTGTGGCCAAGGACGAGCGGGTGCTGGTGACTACCCTGACCA
AGCGCATGGCCGAGGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTGCGCTACTTGCACTCGGACATCGATACC
GTCGAGCGAGTGGAGATCATCCGCGACCTGCGCGCCGGTGCGTTCGACGTGCTGGTGGGGATCAACCTGCTGCGCGAAGG
CCTGGACATGCCCGAGGTGTCGCTGGTGGCGATCCTCGACGCGGACAAGGAAGGCTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATCCTCTACGCCGACAACGTCACCGGCTCGATGCAG
CGTGCGATCGACGAGACCGAGCGGCGTCGGGCCAAGCAGATCGCCTTCAACGAAGCCCATGGCATCGTGCCCAAGGGGGT
GCGCAAGGACATCAAGGACATTCTCGAAGGCGCCGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTGG
CGGAGGAGAGCGGGCGCTACGAGAACGAACTGCGCTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAACTGGAGGAAAAG
ATGTACCAGTTGGCCCGCGACCTGGAGTTCGAGGCGGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(632-665)

UvrB interaction domain (UvrB_inter)

(158-248)

Ultra-violet resistance protein B (UvrB)

(550-592)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Type III restriction enzyme, res subunit (ResIII)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P72174

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae R6

57.839

98.06

0.567
  uvrB Streptococcus pneumoniae D39

57.839

98.06

0.567