Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   N5P33_RS09095 Genome accession   NZ_CP104720
Coordinates   1952532..1952861 (+) Length   109 a.a.
NCBI ID   WP_023089349.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY4593     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1947532..1957861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P33_RS09080 (N5P33_09080) - 1948147..1949109 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  N5P33_RS09085 (N5P33_09085) - 1949109..1950146 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  N5P33_RS09090 (N5P33_09090) - 1950344..1952341 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  N5P33_RS09095 (N5P33_09095) comEA/comE1 1952532..1952861 (+) 330 WP_023089349.1 ComEA family DNA-binding protein Machinery gene
  N5P33_RS09105 (N5P33_09105) - 1953078..1954274 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  N5P33_RS09110 (N5P33_09110) uvrB 1954462..1956474 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11350.37 Da        Isoelectric Point: 9.8865

>NTDB_id=632444 N5P33_RS09095 WP_023089349.1 1952532..1952861(+) (comEA/comE1) [Pseudomonas aeruginosa strain NY4593]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGKAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=632444 N5P33_RS09095 WP_023089349.1 1952532..1952861(+) (comEA/comE1) [Pseudomonas aeruginosa strain NY4593]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCAAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385