Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LQF05_RS17305 Genome accession   NZ_CP088004
Coordinates   3719441..3719932 (-) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain SB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3714441..3724932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF05_RS17280 (LQF05_17265) - 3714548..3715894 (-) 1347 WP_270066883.1 MotA/TolQ/ExbB proton channel family protein -
  LQF05_RS17285 (LQF05_17270) - 3715891..3716676 (-) 786 WP_045159139.1 DUF3450 domain-containing protein -
  LQF05_RS17290 (LQF05_17275) - 3716861..3717553 (+) 693 WP_048328552.1 OmpW/AlkL family protein -
  LQF05_RS17295 (LQF05_17280) - 3717624..3718553 (-) 930 WP_270066884.1 NAD-dependent epimerase/dehydratase family protein -
  LQF05_RS17300 (LQF05_17285) - 3718546..3719430 (-) 885 WP_017244908.1 sugar nucleotide-binding protein -
  LQF05_RS17305 (LQF05_17290) ssb 3719441..3719932 (-) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  LQF05_RS17310 (LQF05_17295) - 3720105..3721472 (-) 1368 WP_017244909.1 MFS transporter -
  LQF05_RS17315 (LQF05_17300) uvrA 3721604..3724441 (+) 2838 WP_013981718.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=632306 LQF05_RS17305 WP_003281797.1 3719441..3719932(-) (ssb) [Stutzerimonas stutzeri strain SB-1]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=632306 LQF05_RS17305 WP_003281797.1 3719441..3719932(-) (ssb) [Stutzerimonas stutzeri strain SB-1]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACTCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503