Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5921_RS13010 Genome accession   NZ_CP104647
Coordinates   2578862..2579398 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PNUSAE008406     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2573862..2584398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5921_RS12990 (N5921_12990) aphA 2574150..2574863 (+) 714 WP_001226923.1 acid phosphatase AphA -
  N5921_RS12995 (N5921_12995) yjbQ 2574974..2575390 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  N5921_RS13000 (N5921_13000) yjbR 2575394..2575750 (+) 357 WP_000155652.1 MmcQ/YjbR family DNA-binding protein -
  N5921_RS13005 (N5921_13005) uvrA 2575785..2578607 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  N5921_RS13010 (N5921_13010) ssb 2578862..2579398 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N5921_RS13015 (N5921_13015) yjcB 2579497..2579778 (-) 282 WP_089648460.1 YjcB family protein -
  N5921_RS13020 (N5921_13020) pdeC 2580207..2581793 (+) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  N5921_RS13025 (N5921_13025) soxS 2581796..2582119 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  N5921_RS13030 (N5921_13030) soxR 2582205..2582669 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=632141 N5921_RS13010 WP_000168305.1 2578862..2579398(+) (ssb) [Escherichia coli strain PNUSAE008406]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=632141 N5921_RS13010 WP_000168305.1 2578862..2579398(+) (ssb) [Escherichia coli strain PNUSAE008406]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489