Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LOC77_RS20385 Genome accession   NZ_CP087957
Coordinates   4050007..4050525 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain B-001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4045007..4055525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS20355 - 4046207..4046587 (-) 381 WP_004392999.1 VOC family protein -
  LOC77_RS20360 - 4046644..4047582 (-) 939 WP_014306206.1 LacI family DNA-binding transcriptional regulator -
  LOC77_RS20365 xth 4047645..4048403 (-) 759 WP_165625861.1 exodeoxyribonuclease III -
  LOC77_RS20370 - 4048400..4048957 (-) 558 WP_165625862.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LOC77_RS20375 - 4048954..4049535 (-) 582 WP_044052734.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  LOC77_RS20380 rpsR 4049724..4049963 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  LOC77_RS20385 ssbA 4050007..4050525 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  LOC77_RS20390 rpsF 4050565..4050852 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  LOC77_RS20395 ychF 4050964..4052064 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  LOC77_RS20400 - 4052191..4054194 (-) 2004 WP_014306209.1 molybdopterin-dependent oxidoreductase -
  LOC77_RS20405 - 4054241..4054447 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=632074 LOC77_RS20385 WP_004392979.1 4050007..4050525(-) (ssbA) [Bacillus velezensis strain B-001]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=632074 LOC77_RS20385 WP_004392979.1 4050007..4050525(-) (ssbA) [Bacillus velezensis strain B-001]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378