Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G163CM_RS16280 Genome accession   NZ_CP087880
Coordinates   3501454..3501984 (-) Length   176 a.a.
NCBI ID   WP_015966315.1    Uniprot ID   -
Organism   Pseudocitrobacter corydidari isolate G163CM     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3496454..3506984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G163CM_RS16255 (G163CM_32470) - 3497273..3498622 (-) 1350 WP_015966310.1 NCS2 family permease -
  G163CM_RS16260 (G163CM_32480) - 3499037..3499705 (-) 669 WP_015966311.1 glutathione S-transferase family protein -
  G163CM_RS16265 (G163CM_32490) soxR 3499969..3500427 (-) 459 WP_015966312.1 redox-sensitive transcriptional activator SoxR -
  G163CM_RS16270 (G163CM_32500) soxS 3500515..3500844 (+) 330 WP_015966313.1 superoxide response transcriptional regulator SoxS -
  G163CM_RS16275 (G163CM_32510) - 3501117..3501398 (+) 282 WP_015966314.1 YjcB family protein -
  G163CM_RS16280 (G163CM_32520) ssb 3501454..3501984 (-) 531 WP_015966315.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G163CM_RS16285 (G163CM_32530) uvrA 3502232..3505057 (+) 2826 WP_015966316.1 excinuclease ABC subunit UvrA -
  G163CM_RS16290 (G163CM_32540) - 3505058..3505411 (-) 354 WP_015966317.1 MmcQ/YjbR family DNA-binding protein -
  G163CM_RS16295 (G163CM_32550) aphA 3505543..3506256 (-) 714 WP_015966318.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18904.94 Da        Isoelectric Point: 5.2456

>NTDB_id=631972 G163CM_RS16280 WP_015966315.1 3501454..3501984(-) (ssb) [Pseudocitrobacter corydidari isolate G163CM]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=631972 G163CM_RS16280 WP_015966315.1 3501454..3501984(-) (ssb) [Pseudocitrobacter corydidari isolate G163CM]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTCGCGGAAGTTGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGTTGAAAAATACACCACCGAAGTGGTTGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGTCAGGGTCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAACAGTCCGCACCG
GCACCGTCTAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.767
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

47.753

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.483