Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   U471_RS16275 Genome accession   NC_022653
Coordinates   3376734..3377423 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens CC178     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3371734..3382423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS16240 (U471_33840) - 3371932..3372414 (-) 483 WP_003151394.1 flagellar protein FlgN -
  U471_RS16245 (U471_33850) flgM 3372429..3372695 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U471_RS16250 (U471_33860) - 3372765..3373184 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  U471_RS16255 (U471_33870) comFC 3373258..3373947 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  U471_RS16260 (U471_33880) - 3373953..3374237 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  U471_RS16265 (U471_33890) comFA 3374295..3375680 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  U471_RS16270 (U471_33900) - 3375788..3376636 (-) 849 WP_003151387.1 DegV family protein -
  U471_RS16275 (U471_33910) degU 3376734..3377423 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  U471_RS16280 (U471_33920) degS 3377500..3378663 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  U471_RS16285 (U471_33930) - 3378886..3379533 (+) 648 WP_007614107.1 YigZ family protein -
  U471_RS16290 (U471_33940) - 3379538..3380758 (+) 1221 WP_012118574.1 LCP family protein -
  U471_RS16295 (U471_33950) - 3380857..3381933 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=63195 U471_RS16275 WP_003219701.1 3376734..3377423(-) (degU) [Bacillus amyloliquefaciens CC178]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=63195 U471_RS16275 WP_003219701.1 3376734..3377423(-) (degU) [Bacillus amyloliquefaciens CC178]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment