Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   U471_RS16265 Genome accession   NC_022653
Coordinates   3374295..3375680 (-) Length   461 a.a.
NCBI ID   WP_012118573.1    Uniprot ID   A7Z9B6
Organism   Bacillus amyloliquefaciens CC178     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369295..3380680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS16230 (U471_33820) flgL 3369470..3370387 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  U471_RS16235 (U471_33830) flgK 3370399..3371916 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  U471_RS16240 (U471_33840) - 3371932..3372414 (-) 483 WP_003151394.1 flagellar protein FlgN -
  U471_RS16245 (U471_33850) flgM 3372429..3372695 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U471_RS16250 (U471_33860) - 3372765..3373184 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  U471_RS16255 (U471_33870) comFC 3373258..3373947 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  U471_RS16260 (U471_33880) - 3373953..3374237 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  U471_RS16265 (U471_33890) comFA 3374295..3375680 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  U471_RS16270 (U471_33900) - 3375788..3376636 (-) 849 WP_003151387.1 DegV family protein -
  U471_RS16275 (U471_33910) degU 3376734..3377423 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  U471_RS16280 (U471_33920) degS 3377500..3378663 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  U471_RS16285 (U471_33930) - 3378886..3379533 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52493.84 Da        Isoelectric Point: 10.2968

>NTDB_id=63194 U471_RS16265 WP_012118573.1 3374295..3375680(-) (comFA) [Bacillus amyloliquefaciens CC178]
MSEGASEFSEVRDFFFGRHLLRSEVPFSDHHIKRVTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSHLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITSGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=63194 U471_RS16265 WP_012118573.1 3374295..3375680(-) (comFA) [Bacillus amyloliquefaciens CC178]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTTCGGCCGGCATTTATTGAGATCTGAGGTACCGTT
TTCAGATCATCACATCAAGCGTGTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACATCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTCACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATCACAAGCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z9B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment